| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,380,891 – 15,380,985 |
| Length | 94 |
| Max. P | 0.994717 |
| Location | 15,380,891 – 15,380,985 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 92.57 |
| Shannon entropy | 0.10001 |
| G+C content | 0.35688 |
| Mean single sequence MFE | -16.56 |
| Consensus MFE | -16.52 |
| Energy contribution | -16.08 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.56 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.73 |
| SVM RNA-class probability | 0.994717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15380891 94 + 22422827 UAUCGCCAAUCGAUAGCUGACC-AAAAACAAUAACAAUAACAA------AAUCAGCUGACGAUAGGACGUCGGAUAUCGAUACCAUAUCACAAACUAAUAA ...((((.((((.(((((((..-....................------..))))))).)))).)).))...(((((.......)))))............ ( -17.26, z-score = -2.99, R) >droEre2.scaffold_4690 7095787 95 - 18748788 CAUCGCCAAUCGAUAGCUGGCCCAAAAACAAUAACAAUAACAA------AAUCAGCUGACGAUAGGACGUCGGAUAUCGAUACCAUAUCACAAAAUAAUAA (..((((.((((.(((((((.......................------..))))))).)))).)).))..)(((((.......)))))............ ( -16.91, z-score = -2.17, R) >droYak2.chrX 9566582 100 + 21770863 UAUCGCUAAUCGAUAGCUGACC-AAAAACAAUAACAAUAACAAUAACAAAAUCAGCUGACGAUAGGACGUCGGAUAUCGAUACCAUAUCACAAAAUAAUAA ........((((((((((((..-............................)))))(((((......)))))..))))))).................... ( -15.51, z-score = -2.51, R) >consensus UAUCGCCAAUCGAUAGCUGACC_AAAAACAAUAACAAUAACAA______AAUCAGCUGACGAUAGGACGUCGGAUAUCGAUACCAUAUCACAAAAUAAUAA ...((((.((((.(((((((...............................))))))).)))).)).))...(((((.......)))))............ (-16.52 = -16.08 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:28 2011