Locus 14775

Sequence ID dm3.chrX
Location 15,372,856 – 15,372,945
Length 89
Max. P 0.798713
window20333

overview

Window 3

Location 15,372,856 – 15,372,945
Length 89
Sequences 5
Columns 89
Reading direction reverse
Mean pairwise identity 60.91
Shannon entropy 0.60981
G+C content 0.46489
Mean single sequence MFE -21.74
Consensus MFE -10.14
Energy contribution -9.82
Covariance contribution -0.32
Combinations/Pair 1.67
Mean z-score -1.22
Structure conservation index 0.47
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.72
SVM RNA-class probability 0.798713
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chrX 15372856 89 - 22422827
AUCAGAUUCAUUUGGCUCAUUGAAUUCAUUUGCCCAUUUGGAUUCCCCGGCUCCAUUCGAUUCAUUUGGCCAUUUGGAUUCACUGGCCG
.............(((.((.((((((((..((.(((..((((((....(....)....))))))..))).))..)))))))).))))). ( -27.20, z-score =  -2.29, R)
>droSim1.chrX_random 4010062 72 - 5698898
-----------------CAUUGGGUUCAUUUGGUCAUUUGGAUUUUCUGGCCACAUUGGAUUAAUUUGGUCAUUUGGAUUUUCUGGCCA
-----------------.............((((((...((((((..((((((.((((...)))).))))))...))))))..)))))) ( -16.50, z-score =  -0.56, R)
>droSec1.super_10110 245 72 - 1408
-----------------CAUUGGGUUCAUUUGGUCAUUUGGAUUUUCUGGCCACAUUGGAUUAAUUUGGUCAUUUGGAUUUUCUGGCCA
-----------------.............((((((...((((((..((((((.((((...)))).))))))...))))))..)))))) ( -16.50, z-score =  -0.56, R)
>droVir3.scaffold_12928 3448881 72 - 7717345
-----------------AUUGGGAUCGACUGGUGCAUUAGGAUCUACAGGUGCGUUUGGAUCCACUGGGGCAUUGGGGUCCACUGGAGC
-----------------....(((((..(..((((....(((((((..........)))))))......))))..))))))........ ( -21.50, z-score =  -0.41, R)
>droMoj3.scaffold_6308 3355266 72 - 3356042
-----------------AUUCGGAUCUACUGGUGCGCUGGGAUCUACUGGUGCAUUAGGGUCAACUGGAGCAUUGGGGUCCACUGGAGA
-----------------....((((((.(((((((((..(......)..)))))))))(.((.....)).)....))))))........ ( -27.00, z-score =  -2.25, R)
>consensus
_________________CAUUGGAUUCAUUUGGGCAUUUGGAUUUACUGGCCCCAUUGGAUUAAUUUGGGCAUUUGGAUUCACUGGCCA
.....................(((((((..((((((....(((((............)))))....))))))..)))))))........ (-10.14 =  -9.82 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:26 2011