| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,371,543 – 15,371,608 |
| Length | 65 |
| Max. P | 0.648050 |
| Location | 15,371,543 – 15,371,608 |
|---|---|
| Length | 65 |
| Sequences | 4 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 64.39 |
| Shannon entropy | 0.54885 |
| G+C content | 0.37678 |
| Mean single sequence MFE | -14.60 |
| Consensus MFE | -7.63 |
| Energy contribution | -7.94 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.648050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15371543 65 + 22422827 GUAAGAAUUUGUUUUUUUUAAGCUUCAAGGAAGUGUGCGUAGGUACAAACAUAUGUAG-AUGUAAC------ .((((((.......)))))).(((((...)))))((((....))))..((((......-))))...------ ( -7.90, z-score = 0.60, R) >droSim1.chrX_random 4008786 64 + 5698898 GUAUGGAUGUGUGUUUUC-AAGCUUCAAGGAAGUGUGCGUAUGUACAUUCAUAUGGAG-AUGUAAC------ (((((((((((..(...(-(.(((((...))))).))...)..)))))))))))....-.......------ ( -18.00, z-score = -2.59, R) >droSec1.super_73 80627 64 + 167737 GUAUGGAUGUGUGUUUUC-AAGCUUCAAGGAAGUGUGCGUAUGUACAUUCAUAUGGAG-AUGUAAC------ (((((((((((..(...(-(.(((((...))))).))...)..)))))))))))....-.......------ ( -18.00, z-score = -2.59, R) >droWil1.scaffold_181130 6652828 72 + 16660200 GUAUGUGUUAACUUUUGCUAAACGUUGCGUGUGUGGGCGUUGUUAAGCCUGAAUAUCUCACACAAGCUUAAA ((.(((((........((........))((((.(((((........))))).))))...))))).))..... ( -14.50, z-score = 0.22, R) >consensus GUAUGGAUGUGUGUUUUC_AAGCUUCAAGGAAGUGUGCGUAGGUACAUUCAUAUGGAG_AUGUAAC______ (((((((((((..(.......(((((...)))))......)..))))))))))).................. ( -7.63 = -7.94 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:25 2011