Locus 14773

Sequence ID	dm3.chrX
Location	15,371,189 – 15,371,249
Length	60
Max. P	0.508629

overview

Window 1

Location	15,371,189 – 15,371,249
Length	60
Sequences	4
Columns	60
Reading direction	forward
Mean pairwise identity	72.41
Shannon entropy	0.43709
G+C content	0.38406
Mean single sequence MFE	-11.88
Consensus MFE	-7.70
Energy contribution	-9.07
Covariance contribution	1.38
Combinations/Pair	1.17
Mean z-score	-1.02
Structure conservation index	0.65
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.03
SVM RNA-class probability	0.508629
Prediction	RNA
WARNING	Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chrX 15371189 60 + 22422827
UAUGAAUGUGUGUGUGUAAGAGUUUCGAAACACUGGCGAACAUUUAUCCGUGUUGGUUCU
.((((((((.(((((((..(.....)...))))..))).))))))))............. (  -9.50, z-score =   0.54, R)
>droEre2.scaffold_4690 7087830 54 - 18748788
------UUAGAAUGUGUGUGAAUUUCGGAACCCUUGAGAACCUUUUUUUGUAUUUAUUCU
------..((((((.(((..((((((((.....)))))).......))..))).)))))) (  -6.81, z-score =  -0.45, R)
>droSec1.super_73 80379 56 + 167737
----UAUGUAUGUGUGUGAGACCUUCGGAACACUGAAGAACAUUUUUCAGUGUUCGUUCC
----.......................((((((((((((....))))))))))))..... ( -15.60, z-score =  -2.08, R)
>droSim1.chrX_random 4008538 56 + 5698898
----UAUGUAUGUGUGUGAGACCUUCGGAACACUGAAGAACAUUUUUCAGUGUUCGUUCC
----.......................((((((((((((....))))))))))))..... ( -15.60, z-score =  -2.08, R)
>consensus
____UAUGUAUGUGUGUGAGACCUUCGGAACACUGAAGAACAUUUUUCAGUGUUCGUUCC
...........................((((((((((((....))))))))))))..... ( -7.70 =  -9.07 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:24 2011