| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,370,331 – 15,370,440 |
| Length | 109 |
| Max. P | 0.537495 |
| Location | 15,370,331 – 15,370,440 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 51.47 |
| Shannon entropy | 0.77317 |
| G+C content | 0.53951 |
| Mean single sequence MFE | -33.78 |
| Consensus MFE | -11.62 |
| Energy contribution | -13.12 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.537495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15370331 109 - 22422827 CAAAUGGAUUUCGGCAAAUGAGCAGCA-AAAAACGAGUGGCCCAUGCUAACAACACGUGCUGGGCUCCCUUUGCUGCUGUUAGCCAUCGUCACAUUUUUU---UUGCCGGACC---- .((((((((...(((.(((.(((((((-((....(.(..(((((.((...........)))))))..)))))))))))))).)))...))).)))))...---..........---- ( -33.80, z-score = -1.34, R) >droSec1.super_73 79421 108 - 167737 UAAAUGGAUUUCGGCAAAUGAGCAGCA-AAAAGCCAGCGGCCCAUGUUUAAAACACGUGCUGGGCUCCCCUGGCUGCUGUUGGCCAUCGUCACA-CUUUU---UUGCCGGACC---- .........(((((((((.((((((((-....(((((.((((((.((...........))))))))...)))))))))).((((....))))..-))).)---))))))))..---- ( -38.70, z-score = -1.71, R) >droYak2.chrX 9558608 105 - 21770863 ------------CAAAGAUCCCAGUGGCCAGGGCCAGCAUGCUGAGCUUACCAUGCGUGUCGGGUUCCUCUGGCCGCUCCCAGCCUUGUACUCCUUCCUCCCAUUCCUGGGCACUCC ------------..........(((((((((((((.((((((((.......)).)))))).))....)))))))))))(((((...((.............))...)))))...... ( -34.72, z-score = -0.49, R) >droEre2.scaffold_4690 7087040 95 + 18748788 ------------GGCGUAUUACCGCCAUGAUGGUAAUCCCAAUG-GCUUACAUUGCGUGCCGGGUUCCUCUGGCCGCUCUUAG---------CUUUUUUCAAAUUCCUGGGCGCUUU ------------(((((....(((((((...((....))..)))-)).......(((.((((((....)))))))))......---------................))))))).. ( -27.90, z-score = -0.54, R) >consensus ____________GGCAAAUGACCAGCA_AAAAGCCAGCGGCCCAUGCUUACAACACGUGCCGGGCUCCCCUGGCCGCUCUUAGCCAUCGUCACAUUUUUC___UUCCCGGACC____ ...........((((((..............((((((.((((((.((...........))))))))...))))))((.....))...................))))))........ (-11.62 = -13.12 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:23 2011