| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,433,186 – 11,433,283 |
| Length | 97 |
| Max. P | 0.600548 |
| Location | 11,433,186 – 11,433,283 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 71.72 |
| Shannon entropy | 0.51862 |
| G+C content | 0.52190 |
| Mean single sequence MFE | -27.59 |
| Consensus MFE | -13.06 |
| Energy contribution | -12.90 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600548 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11433186 97 + 23011544 UCCUCGGUGAAUAUUCCCGCUGACAGAGUGAUGGAAUGGGCGGGAUGAUGUUCCUGAUGUCCCAUGUCCCGAUCCCAAGUUAUUCCC---UCAUUCCUGU ...((((((........))))))((((((((.((((((((((((((((((((...))))))....))))))..)))).....)))).---))))).))). ( -31.30, z-score = -1.48, R) >droSim1.chr2L 11242659 85 + 22036055 --------GAAUAUUCCCGCUGACAGAGUGAUGGAAUGGGCGGGAUGAUAUGCA----GACCCAUGCCCCGAUCCCAAGUUAUUCCC---UCAUUCCAGU --------..........((((...((((((.(((((((..(((((.....(((----......)))....)))))...))))))).---)))))))))) ( -25.00, z-score = -1.19, R) >droSec1.super_3 6828298 93 + 7220098 UCCUCGGUGAAUAUUCCCGCUGACAGAGUGAUGGAAUGGGCGGGAUGAUAUGCA----GACCCAUGCCGCGAUCCCAAGUUAUUCCC---UCAUUCCUGU ...((((((........))))))((((((((.(((((((..((((((....(((----......)))..).)))))...))))))).---))))).))). ( -29.00, z-score = -0.89, R) >droYak2.chr2L 7833892 84 + 22324452 UCCUCGGUGCAUAUUCCCGCCGACAGAGUGAUGGAAGGAGCGGAAUGAU-------------CCCGCCACGAUACCGAGUUAUUCCC---UCAUUCCCGU ...((((((........))))))..((((((.((((.(.((((......-------------.))))).((....)).....)))).---)))))).... ( -24.40, z-score = -0.97, R) >droEre2.scaffold_4929 12635226 88 - 26641161 ----CGGUGGAUAUUCCCGCUGACAGAGUGAUGGAAUGGGCGGGAUGAUAUGAG-----ACCCUUGCCCCGAUCCCGAGUUAUUUCU---UCAUUCCUGC ----((((((......)))))).((((((((.(((((((.((((((........-----............))))))..))))))).---))))).))). ( -27.65, z-score = -0.90, R) >droAna3.scaffold_12916 12139343 90 - 16180835 --------GACCGCUGCCGCUGACUGA-UGGCGGAAUGAAAGAAAUGAUAUGCA-GUCCAGAUCCGAUCCGAUCUGUAAUUAUUCUCCUUUCAUUCCAGC --------....((((((((.....).-))))((((((((((.((((((.((((-(..(.(((...))).)..)))))))))))...))))))))))))) ( -28.20, z-score = -3.04, R) >consensus ____CGGUGAAUAUUCCCGCUGACAGAGUGAUGGAAUGGGCGGGAUGAUAUGCA____GACCCAUGCCCCGAUCCCAAGUUAUUCCC___UCAUUCCUGU .................((((.....))))..(((((((..((((((((.............................))))))))....)))))))... (-13.06 = -12.90 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:39 2011