| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,344,211 – 15,344,318 |
| Length | 107 |
| Max. P | 0.801690 |
| Location | 15,344,211 – 15,344,318 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 70.80 |
| Shannon entropy | 0.56423 |
| G+C content | 0.50141 |
| Mean single sequence MFE | -30.97 |
| Consensus MFE | -16.85 |
| Energy contribution | -18.05 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.801690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15344211 107 - 22422827 CACUAGAAUUCCAAUUGCGGAAUGGCGGCCCCAGGGAUGGGAACUGGUUCCACGCAGCUGGUUCAGCUGGAGCAGUUCCGAUUGGCACGAU-UGUUGCCAUUUAAAUU ............((((...((((((((((....(.(((.(((((((.(((((....((((...)))))))))))))))).)))....)...-.)))))))))).)))) ( -34.50, z-score = -0.42, R) >droSim1.chrX 11855070 107 - 17042790 CACUAAAAUUCCAAUUGCGGAAUGGCGGCACCAGGGAUGGGAACUAGUUCCACACAGCUGGUUCAGCUGGAGCAGUUCCGAUUGGCACGAU-UAUUGCAAUUUAAAUU ......((((..((((((((.....((...(((...((.((((((.((((((....((((...)))))))))))))))).)))))..))..-..))))))))..)))) ( -30.60, z-score = -1.42, R) >droSec1.super_73 34037 107 - 167737 CACUAGAAUUCCAAUUGCGGAAUGGCGGCACCAGGGAUGGGAACUAGUUCCACACAGCUGGUUCAGCUGGAGCAGUUCCGAUUGGCACGAU-UAUUGCAAUUUAAAUU ......((((..((((((((.....((...(((...((.((((((.((((((....((((...)))))))))))))))).)))))..))..-..))))))))..)))) ( -30.70, z-score = -1.30, R) >droYak2.chrX 9532727 107 - 21770863 CACUAGAAUUCCAAUUGCGGAAUGGCGGCACCAGGGCUGGGAACUGGUUCCACGGAGCUGGUUCUGCUGAACUAGUUCCACUCGAAACGAU-UAUUGUCAUUUAAAUU ............((((...(((((((((.(((((..(...)..))))).))..(((((((((((....)))))))))))............-....))))))).)))) ( -35.30, z-score = -2.62, R) >droEre2.scaffold_4690 7060100 104 + 18748788 CACUAGAAUUCCAAUUGCGGAAUGGCGGCACCAGCGAUGGGAACUGGUUCCACGGAGCUGCUUCGGCUGGACUAGUUCCGGUCGACACGAUAUAUUCACAUUUC---- .....((((....((((.(...(((.....))).((((.(((((((((((..(((((...)))))...))))))))))).)))).).))))..)))).......---- ( -33.40, z-score = -1.79, R) >droAna3.scaffold_13117 1547690 84 - 5790199 CAGUCCGCAUGUAAU--CGGAUUGGCGGCACCAGGGAUGGAAUCAACCGUUGAACCUUCGAACUCACCACAGUGGUGGAGUAGAGU---------------------- (((((((........--)))))))((((..(((....)))......))))......(((..(((((((.....))).)))).))).---------------------- ( -21.30, z-score = 0.76, R) >consensus CACUAGAAUUCCAAUUGCGGAAUGGCGGCACCAGGGAUGGGAACUAGUUCCACACAGCUGGUUCAGCUGGAGCAGUUCCGAUUGGCACGAU_UAUUGCCAUUUAAAUU .................((((((..((((.(((....)))(((((((((......))))))))).)))).....))))))............................ (-16.85 = -18.05 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:18 2011