| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,343,036 – 15,343,152 |
| Length | 116 |
| Max. P | 0.628696 |
| Location | 15,343,036 – 15,343,152 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.72 |
| Shannon entropy | 0.31902 |
| G+C content | 0.43435 |
| Mean single sequence MFE | -30.07 |
| Consensus MFE | -16.23 |
| Energy contribution | -17.10 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.628696 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15343036 116 - 22422827 UAAAAGUUUGCCCUAAAAGUCUGUACAGUAAUCACUUUGCUAGAGUGCCGGGAUUAGGGC----AGGCAUAUCACAUUUUACUCUCCAUCAAGAGUCAGAAAGAUAAGCGGGCUUAUCUC .....(((((((((((...((((((((((((.....)))))...))).)))).)))))))----))))........(((((((((......))))).))))(((((((....))))))). ( -35.20, z-score = -2.97, R) >droSec1.super_73 32853 104 - 167737 UAAAAGCUUGCCCUAAAAGUCUGCACAGUAA--ACUUUGCUAGAGUGCC-GGAUUAGGGC----AGGCAUAUCACAUUUUAGUCUCCAUCA---------AAGAUAACCGUGCUUAUCUC .....((((((((((...((((((((((((.--....))))...))).)-))))))))))----)))).......................---------.((((((......)))))). ( -29.60, z-score = -2.62, R) >droYak2.chrX 9531255 111 - 21770863 --------UGCCCUUAAAGUCUGCACAGUAAUCACUUUGCCAGAGUGAC-GGAUUAGGGCGUACAGGCAUAUCACAUCUUACGCUCCAUUAAGAGUCACAAAGAUAACCGGGCUUAUCUG --------.((((......((((((.(((....))).)).))))(((((-...((((((((((.(((.........))))))))))...)))..)))))..........))))....... ( -30.00, z-score = -1.77, R) >droEre2.scaffold_4690 7059060 111 + 18748788 --------UGCCCUUAAAGUCUGCACAGUAAUCACUUUCAAAGAGUGCC-GGAUUAGGGCGUAUAGGCUUAUCACAUCUUACUUUCCAUCAAGAGUCACAAAGAUAGCCGGACUUAUCUC --------.(((((...(((((((((..................))).)-))))))))))((...((((.(((.......(((((......)))))......)))))))..))....... ( -25.49, z-score = -1.23, R) >consensus ________UGCCCUAAAAGUCUGCACAGUAAUCACUUUGCUAGAGUGCC_GGAUUAGGGC____AGGCAUAUCACAUCUUACUCUCCAUCAAGAGUCACAAAGAUAACCGGGCUUAUCUC .........(((((...((((((((((((((.....)))))...))))..)))))))))).........................................((((((......)))))). (-16.23 = -17.10 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:17 2011