Locus 14764

Sequence ID dm3.chrX
Location 15,332,307 – 15,332,424
Length 117
Max. P 0.679840
window20321

overview

Window 1

Location 15,332,307 – 15,332,424
Length 117
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 93.50
Shannon entropy 0.09125
G+C content 0.28893
Mean single sequence MFE -23.23
Consensus MFE -20.29
Energy contribution -21.07
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -1.73
Structure conservation index 0.87
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.40
SVM RNA-class probability 0.679840
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15332307 117 + 22422827
AUUUGUUCGUUUCACGCUGAUUUAUUUGAUUU-GGUAUCAAGUAAAUUCCUUCUGCUAAGAAAGUACAUUUUCCUUUAUAAAAGUGAUUUAUCAGUUUGAAAGUACAUUACAUUUGCA
...(((.(.(((((.(((((((((((((((..-...))))))))))....((((....))))....((((((........)))))).....))))).)))))).)))........... ( -21.80, z-score =  -1.53, R)
>droSec1.super_73 22391 118 + 167737
ACUUGUUCUUUUCACGCUGAUUUAUUUGAUUCCGGUAUCAAGUAAAUUCCUUCUGCUAAGUGAGUACAUUUUAUUUUAUAAAAGUGAUUUAUCAGUUGGAAAGUACAUUAAAUUUGCA
...(((.(((((((.(((((((((((((((......)))))))))).(((((.((..(((((((.....)))))))..)).))).))....)))))))))))).)))........... ( -25.50, z-score =  -2.52, R)
>droSim1.chrX 11846706 118 + 17042790
ACUUGUUCUUUGCACGCUGAUUUAUUUGAUUCCGGUAUCAAGUAAAUUCCUUCUGCUAAGCAAGUACAUUUUAUUUUAUAAAAGUGAUUUAUCAGUUGGAAAGUACAUUAAAUUUGCA
...(((.((((.((.(((((((((((((((......))))))))))...............((((.((((((........)))))))))).))))))).)))).)))........... ( -22.40, z-score =  -1.16, R)
>consensus
ACUUGUUCUUUUCACGCUGAUUUAUUUGAUUCCGGUAUCAAGUAAAUUCCUUCUGCUAAGAAAGUACAUUUUAUUUUAUAAAAGUGAUUUAUCAGUUGGAAAGUACAUUAAAUUUGCA
...(((.(((((((.(((((((((((((((......))))))))))...............((((.((((((........)))))))))).)))))))))))).)))........... (-20.29 = -21.07 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:15 2011