| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,330,748 – 15,330,822 |
| Length | 74 |
| Max. P | 0.782250 |
| Location | 15,330,748 – 15,330,822 |
|---|---|
| Length | 74 |
| Sequences | 7 |
| Columns | 83 |
| Reading direction | reverse |
| Mean pairwise identity | 63.80 |
| Shannon entropy | 0.65574 |
| G+C content | 0.62807 |
| Mean single sequence MFE | -28.60 |
| Consensus MFE | -11.37 |
| Energy contribution | -10.59 |
| Covariance contribution | -0.78 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.782250 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15330748 74 - 22422827 -------GGGGCGUGGUGGGUGGAGAGAACGAGAGUUGGAAGGAUGCCGGG-GUCUGGGUGGCAUUUCCGGCUUGAGCCC-CA -------(((((.......((.......))..((((((((..(((((((..-.......)))))))))))))))..))))-). ( -28.40, z-score = -1.39, R) >droSim1.chrX 11845193 74 - 17042790 -------GGGGCGUGGUGGGCGGAGAGAACGAGAGUUGGAAGGGCGCCGGG-GUCUGGGUGGCAUUUCCGGCUUGCGCCC-CA -------(((((((...((.((((((.(((....))).....(.((((.(.-...).)))).).)))))).)).))))))-). ( -36.50, z-score = -2.48, R) >droYak2.chrX 9519795 75 - 21770863 -------GGGGCGUGGUGGGUGGAGAGAGCGAGAGCUGGAAGGGUUCCGGGUGUGUGGGUGGCAUUUCCGGCUUGUGCCC-CA -------((((((..(...........(((....))).........(((((.((((.....)))).))))).)..)))))-). ( -29.20, z-score = -1.33, R) >droEre2.scaffold_4690 7047750 73 + 18748788 -------GGGGCGUGGUGGGUGAAGAGAGCGAGAGUUGAAGGGGG--CGAGGGUUCGGGUGGCAUUUCCGGCUUGCGCCC-CA -------((((((((((.((.((....(((....))).....(((--(....))))........)).)).)).)))))))-). ( -25.40, z-score = -0.28, R) >droSec1.super_73 20891 74 - 167737 -------GGGGCGUGGUGGGCGGAGAGAACGAGAGUUGGAAGGGCGCCGGG-GUCUGGGUGGCAUUUCCGGCUUGAGCCC-CA -------(((((.....((.((((((.(((....))).....(.((((.(.-...).)))).).)))))).))...))))-). ( -32.80, z-score = -1.78, R) >droPer1.super_14 832594 82 + 2168203 GGGGAGAGGAACGGGGAAAGCGUUAGGGUGA-UGGUAAGGUGAGAGCUAGAAAUUCUCCUAGAAAUUCUUGUUGGCUCUCGCA .(.(((((.((((((((.....(((((..((-(.....(((....)))....)))..)))))...))))))))..))))).). ( -24.40, z-score = -1.44, R) >dp4.chrXL_group1e 12271668 83 - 12523060 GGGGAGAGGAACGGGGAAAGCGUUGGGGUGAGAGGUAAGGUGAGAGCUAGAAAUUCUCCUAGAAAUUCUUGUUGGCUCUCGCA .(.(((((.((((((((.....((((((.(((...(..(((....)))..)..)))))))))...))))))))..))))).). ( -23.50, z-score = -0.79, R) >consensus _______GGGGCGUGGUGGGCGGAGAGAACGAGAGUUGGAAGGGAGCCGGG_GUCUGGGUGGCAUUUCCGGCUUGCGCCC_CA .......(((((((..................((((((((((....(((..........)))..)))))))))))))))).). (-11.37 = -10.59 + -0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:14 2011