| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,321,116 – 15,321,208 |
| Length | 92 |
| Max. P | 0.909186 |
| Location | 15,321,116 – 15,321,208 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 71.23 |
| Shannon entropy | 0.54168 |
| G+C content | 0.31212 |
| Mean single sequence MFE | -18.74 |
| Consensus MFE | -10.33 |
| Energy contribution | -10.87 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.909186 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15321116 92 - 22422827 ------UAUAAAUCU--AUCUAUAUGUGCUGCAUUUUGUUAUGGAUUUUGGACAA--ACAUACAAACGAUAUUAAUCAUAUUAUCAGGUGGGUAGCACAUAG ------.........--.....((((((((((..(((((.(((............--.)))))))).((((.((....)).))))......)))))))))). ( -19.72, z-score = -1.98, R) >droAna3.scaffold_13117 1528166 79 - 5790199 --------------------UUUAAAUUAAUCAUUCUGUU-UGCUUUUUAAUUACCAGAAUAUAUAUUUGUUUGGU--UAUUAGUCGGUGGGUAGCACUCAG --------------------...............(((..-((((..(((((.((((((.((......))))))))--.)))))..))))..)))....... ( -13.20, z-score = -1.19, R) >droEre2.scaffold_4690 7039323 96 + 18748788 UAUACUCGUAAAUAU--AAAUAUAUAUGCUGCGUUUUGAUAUGGGCGUAGCACAA----ACACAAUCGAUUUUAAUCAUAUUAUCAGGUGGGUAGCACAUAG ..((((((.......--.........((((((((((......))))))))))...----........(((..((....))..)))...))))))........ ( -18.20, z-score = -0.85, R) >droYak2.chrX 9511377 96 - 21770863 ----UAAAUAUCUAUAUAUAUAUAUGUGCUGCAUUUUGUUAUGGGUGUUGGACAA--ACACACAAUCGAUAUUAAUCAUAUUAUCAGGUGGGUAGCACAUAG ----..................((((((((((.........((.(((((.....)--)))).))...((((.((....)).))))......)))))))))). ( -22.60, z-score = -1.83, R) >droSec1.super_73 8935 94 - 167737 ------UAUAAAUAUAAAUGUAUAUGUGCUGCAUUUCGUUAUGGGUUUUGGACAA--ACACACAAUCGAUAUUAAUCAUAUUAUCAGGUGGGUAGUACAUAG ------................((((((((((.......(((.((((.((.....--...)).)))).)))....((((........)))))))))))))). ( -18.80, z-score = -1.22, R) >droSim1.chrX 11810161 96 - 17042790 ------UAUAAAUAUAAAUGUAUAUGUGCUGCAUUUCGUUAUGGGUUUUGGACAAACACACACAAUCGAUAUUAAUCAUAUUAUCAGGUGGGUAGCACAUAG ------................((((((((((.......(((.((((.((..........)).)))).)))....((((........)))))))))))))). ( -19.90, z-score = -1.53, R) >consensus ______UAUAAAUAU__AUAUAUAUGUGCUGCAUUUUGUUAUGGGUUUUGGACAA__ACACACAAUCGAUAUUAAUCAUAUUAUCAGGUGGGUAGCACAUAG ......................((((((((((.........((.........))......(((....((((.((....)).))))..))).)))))))))). (-10.33 = -10.87 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:14 2011