| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,298,932 – 15,299,033 |
| Length | 101 |
| Max. P | 0.622685 |
| Location | 15,298,932 – 15,299,033 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 72.18 |
| Shannon entropy | 0.47516 |
| G+C content | 0.57128 |
| Mean single sequence MFE | -33.04 |
| Consensus MFE | -18.16 |
| Energy contribution | -18.66 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.622685 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15298932 101 + 22422827 CCGCUUCCCUGUUCUCGGUUAUCGGUUUUUGUGGCCAU-CAACCCGC-------AGGCCGUGACCGCUUGGAACGCUAAACCAUUGCGUUCGGUUCGCCACUUGACUGA ........(((....)))...((((((...(((((...-.((((..(-------((((.......)))))((((((.........)))))))))).)))))..)))))) ( -31.10, z-score = -0.93, R) >droYak2.chrX 9496522 100 + 21770863 --------CGGUUCCCGGUUAUCGGUUUUUGUGGCCAU-CAACCCGCUGGCCGCAGGCCGUGACCGUCCGGAAUGCUAAACCAUUGCGUUCGGUUCGCCACUUGACUGA --------(((....((((((.((((..(((((((((.-(.....).))))))))))))))))))).)))((((((.........))))))((....)).......... ( -39.60, z-score = -1.95, R) >droSec1.super_56 183690 81 + 192059 CCGGUUCCCUGUUCUCGGUUAUCGGUUUUUGUGGCCAU-CAACCCGC-------AGGCCGUGACCGCUUGGAAUGCUAAACCAAACUGA-------------------- ..((((...((((((((((((.((((..((((((....-....))))-------))))))))))))...))))))...)))).......-------------------- ( -25.80, z-score = -1.43, R) >droSim1.chrX 11828005 101 + 17042790 CCGGUUCCCUGUUCUCGGUUAUCGGUUUUUGUGGCCAU-CAACCCGC-------AGGCCGUGACCGCUUGGAAUGCUAAACCAUUGCGUUCGGUUCGCCACUUGACUGA (((((..((.......))..))))).....(((((...-.((((..(-------((((.......)))))((((((.........)))))))))).)))))........ ( -30.60, z-score = -0.49, R) >droAna3.scaffold_13117 1513671 91 + 5790199 -------------CCCGGUU--UGGUUUUUGCGGCCAUAUUGCCCGGCCGC---AGGCCAUGACCGGCCGGAAUGCUAAGCAAUCGCGUUCGGUUCGCCACUUGACUGA -------------..(((((--.(((...(((((((.........))))))---)(((...(((((..((((.(((...))).)).))..))))).)))))).))))). ( -38.10, z-score = -1.74, R) >consensus CCG_UUCCCUGUUCUCGGUUAUCGGUUUUUGUGGCCAU_CAACCCGC_______AGGCCGUGACCGCUUGGAAUGCUAAACCAUUGCGUUCGGUUCGCCACUUGACUGA ...............((((((.((((((..((((.........)))).......))))))))))))....((((((.........))))))((....)).......... (-18.16 = -18.66 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:12 2011