| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,430,589 – 11,430,729 |
| Length | 140 |
| Max. P | 0.976799 |
| Location | 11,430,589 – 11,430,729 |
|---|---|
| Length | 140 |
| Sequences | 7 |
| Columns | 151 |
| Reading direction | forward |
| Mean pairwise identity | 75.01 |
| Shannon entropy | 0.48969 |
| G+C content | 0.51328 |
| Mean single sequence MFE | -43.70 |
| Consensus MFE | -27.18 |
| Energy contribution | -27.60 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.976799 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11430589 140 + 23011544 GCGUCGCAAAUUAUCCGACUUCG-----ACGAGGCGU----GCCA--GCCAAGUCAAUCGCCUUCGAUUGUCUCCGUCGAACGAUGUGUUGUGCGGCCCAGUCCCGAGUCUCAUUUGGCCUAAUGGCUGCCAGGAUAAGUGCCAGCGAAAA ((...(((..((((((...((((-----(((.(((..----....--))).((.((((((....)))))).)).)))))))........((.((((((.....((((((...))))))......)))))))))))))).)))..))..... ( -48.40, z-score = -1.72, R) >droSim1.chr2L 11239891 140 + 22036055 GCGUCGCAAAUUAUCCGACUUCG-----ACGAGGCGU----GCCA--GCCAAGUCAAUCGCCUUCGAUUGUCUCCGUCGAACGAUGUGUUGUGCGGCCCAGUCCCGAGUCUCAUUUGGCCUAAUGGCUGCCAGGAUAAGUGCCAGCGAAAA ((...(((..((((((...((((-----(((.(((..----....--))).((.((((((....)))))).)).)))))))........((.((((((.....((((((...))))))......)))))))))))))).)))..))..... ( -48.40, z-score = -1.72, R) >droSec1.super_3 6825543 140 + 7220098 GCGUCACAAAUUAUCCGACUUCG-----ACGAGGCGU----GCCA--GCCAAGUCAAUCGCCUUCGAUUGUCUCCGUCGAACGAUGUUUUGUGCGGCCCAGUCCCGAGUCUCAUUUGGCCUAAUGGCUUCCAGGAUAAGUGCCAGCGAAAA (((.((((((.((((....((((-----(((.(((..----....--))).((.((((((....)))))).)).))))))).)))).)))))))((((..(((((((((...)))))(((....))).....))))..).))).))..... ( -46.60, z-score = -2.14, R) >droYak2.chr2L 7830915 140 + 22324452 GCGUCGCAAAUUAUCCGACUUCG-----ACGAGGCGU----GCCA--GCCAAGUCAAUCGCCUUCGAUUGUCUCCGUCGAGCGAUGUGUUGUGCGGCCCAGUCCCGAGUCUCAUUUGGCCUAAUGGCUGCCAGGAUAAGUGCCAGCGAAAA ((...(((..(((((((((((.(-----((..(((.(----((((--((..((.((((((....)))))).)).((((....)))).)))).))))))..)))..)))))......((((....))))....)))))).)))..))..... ( -48.40, z-score = -1.45, R) >droEre2.scaffold_4929 12632462 140 - 26641161 GCGUCGCAAAUUAUCCAACUUCG-----ACGAGGCGU----GCCA--GCCAAGUCAAUCGCCUUCGAUUGUCUCCGUCGAGCGAUGUGUUGUGCGGCCCAGUCCCGAGUCUCAUUUGGCCUAAUGGCUGCCAGGAUAAGUGCCAGCGAAAA ((...(((..((((((...((((-----(((.(((..----....--))).((.((((((....)))))).)).)))))))........((.((((((.....((((((...))))))......)))))))))))))).)))..))..... ( -48.10, z-score = -1.66, R) >droAna3.scaffold_12916 12137097 120 - 16180835 ACAACGCAAAUUAUCCGACUCUG-----ACAGGGCGUU---GCCA--GCCAAGUCAAUCGCCUUCGAUUGUCCCUGCAAA--------------------GUCCC-AGUCUCAUUUGGCCUAAUGGCUGCCAGGAUGCGUGUUGGCCAAAA .((((((....(((((((((.((-----.((((((...---....--)))..(.((((((....)))))).).))))).)--------------------)))..-..........((((....))))....))))).))))))....... ( -36.80, z-score = -1.12, R) >droGri2.scaffold_15126 7249028 145 - 8399593 ACAUCUUAAAUUCAACACUUUCAUAUAUAUAAAUUAUAUAUGCCAAAGUUGAAUCAUUAACUGAUUUCAGUAACUGUCUAACAAGCCAUUGUUCGGUC---UGCUUAUUCCCAAGCAGCUU--UAACUUUUAUGGUGCUAAACAUAAAAA- .........(((((((.....((((((((.....)))))))).....))))))).....((((....))))...(((.((....(((((.(((..(.(---(((((......)))))).).--.)))....)))))..)).)))......- ( -29.20, z-score = -3.26, R) >consensus GCGUCGCAAAUUAUCCGACUUCG_____ACGAGGCGU____GCCA__GCCAAGUCAAUCGCCUUCGAUUGUCUCCGUCGAACGAUGUGUUGUGCGGCCCAGUCCCGAGUCUCAUUUGGCCUAAUGGCUGCCAGGAUAAGUGCCAGCGAAAA ((...(((...(((((..(((((......))))).......((((..(((((((((((((....)))))).....((((.((((....)))).))))...............)))))))....)))).....)))))..)))..))..... (-27.18 = -27.60 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:39 2011