| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,285,207 – 15,285,325 |
| Length | 118 |
| Max. P | 0.778807 |
| Location | 15,285,207 – 15,285,325 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 122 |
| Reading direction | reverse |
| Mean pairwise identity | 85.83 |
| Shannon entropy | 0.22571 |
| G+C content | 0.37164 |
| Mean single sequence MFE | -25.21 |
| Consensus MFE | -19.96 |
| Energy contribution | -20.77 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.778807 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15285207 118 - 22422827 GACGCCAAUGCAGAUGAUGCAC--CAUGUAUAUUUCUGAUCCGUACUUUGUCUGUUAUUUAUUAUGUAUGAA--CAACCUUUCACCUAAAACCUGAACAUCUGCAUUGGUAUACAGAGCUUC ...(((((((((((((((((..--...))))..........(((((...................)))))..--.......................)))))))))))))............ ( -26.61, z-score = -2.33, R) >droEre2.scaffold_4690 7010719 116 + 18748788 GAUGUCAAUGCAGAUGAUGCAC--UAUGUAUAUUUUUGAUCCGU-CUUUGUCUGCCCUUAAUACUGUAUAAA---AACCAUUCACCCACAAUCUGAACAUCUGCAUUGGUAUACAGAGCUUC .((..((((((((((((((((.--(((..........(((....-....)))........))).)))))...---.....((((.........)))))))))))))))..)).......... ( -22.97, z-score = -1.15, R) >droYak2.chrX 9482061 122 - 21770863 GAUGCCAAUGCAUAUGAUGCACUAUAUAUAUAUUUUUGAUUCUUACUUUGUCUGUCCUUUGUAAUGUGUAAAAAGAACCAUUCACGCAAAAACUGAACAUCUGCAUUGGUAUACAGAGCUUC .(((((((((((.(((.(((((....((((.......(((.........))).......))))..)))))..........((((.(......)))))))).))))))))))).......... ( -23.54, z-score = -0.84, R) >droSec1.super_56 170004 118 - 192059 GACGCCAAUGCAGAUGAUGCAC--CAUGUAUAAUUCUGAUCCGUACUUUGUCUGUCAUUUAUAUUGUAUGAA--CAACCUUUCACCCAAAACCUAAACAUCUGCAUUGGUAUACAGAGCUUC ...(((((((((((((((((..--...))))..........(((((..(((.........)))..)))))..--.......................)))))))))))))............ ( -27.70, z-score = -2.86, R) >consensus GACGCCAAUGCAGAUGAUGCAC__CAUGUAUAUUUCUGAUCCGUACUUUGUCUGUCAUUUAUAAUGUAUAAA__CAACCAUUCACCCAAAACCUGAACAUCUGCAUUGGUAUACAGAGCUUC .((((((((((((((((((((.....)))))......(((.........))).............................................))))))))))))))).......... (-19.96 = -20.77 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:09 2011