| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,277,020 – 15,277,115 |
| Length | 95 |
| Max. P | 0.801989 |
| Location | 15,277,020 – 15,277,115 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 85.19 |
| Shannon entropy | 0.23316 |
| G+C content | 0.61513 |
| Mean single sequence MFE | -43.75 |
| Consensus MFE | -27.08 |
| Energy contribution | -28.58 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.801989 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15277020 95 - 22422827 CCGCCGCCAACUGUCUGACUGACGGACUUGCGAGUUGUCGGGGUUACCGAUUCCAUUCU----GGGCGG-GG-AAGGUGGG-CAAAUGGUCCCAUUUCGGCC ((.(((((..(((((.....)))))......((((.(((((.....)))))...)))).----.)))))-))-.(((((((-(.....).)))))))..... ( -34.80, z-score = 0.01, R) >droSim1.chrX 11796602 96 - 17042790 CCGCCGCCGGCUGUCUGACUGACGGACUGGCGAGUUGUCGGGGUUACCGAUUCUAUUCU----GGGCGGUGG-UAGGUGGG-CAAAUGGGCCCAUUUUGGCC (((((((((((((((.....))))).)))))((((.(((((.....)))))...)))).----.))))).((-(.((((((-(......)))))))...))) ( -48.70, z-score = -3.69, R) >droSec1.super_56 161856 96 - 192059 CCGCCGCCGGCUGUCUGACUGACGGACUGGCGAGUUGUCGGGGUUACCGAUUCUAUUCU----GGGCGGUGG-UAGGUGGG-CAAAUGGGCCCAUUUUGGCC (((((((((((((((.....))))).)))))((((.(((((.....)))))...)))).----.))))).((-(.((((((-(......)))))))...))) ( -48.70, z-score = -3.69, R) >droEre2.scaffold_4690 7002599 95 + 18748788 ---CCGGCGACUGUCUGACU----GACUGGCGGGUUGUCGGGGUUACCAUUUCCAUUCUGGGAGGGCGGUGGCCAAAUGGGCCAAAUGGGCCUAUUUUGGCC ---((((((((((((.....----....))).)))))))))(((((((.(((((......)))))..)))))))(((((((((.....)))))))))..... ( -42.80, z-score = -2.54, R) >consensus CCGCCGCCGACUGUCUGACUGACGGACUGGCGAGUUGUCGGGGUUACCGAUUCCAUUCU____GGGCGGUGG_UAGGUGGG_CAAAUGGGCCCAUUUUGGCC ((((((((....(((((.....)))))....((((.(((((.....)))))...))))......))))))))..(((((((.(.....).)))))))..... (-27.08 = -28.58 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:05 2011