| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,250,942 – 15,251,045 |
| Length | 103 |
| Max. P | 0.607105 |
| Location | 15,250,942 – 15,251,045 |
|---|---|
| Length | 103 |
| Sequences | 7 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 63.38 |
| Shannon entropy | 0.70004 |
| G+C content | 0.56466 |
| Mean single sequence MFE | -34.07 |
| Consensus MFE | -11.79 |
| Energy contribution | -13.71 |
| Covariance contribution | 1.93 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.607105 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15250942 103 - 22422827 ----UGGUGAUGUGGGUG-GCUCUGCGGGCGGAUUCCAUGGCCAUAUCCUUCGAUGCUGACGUUGACGGUGGCGUUAACGUUAACGGUAAAGUUAACGCUGGCAGCGA ----.((.((((((((((-(.((((....))))..))))..)))))))))(((.((((..(((((((..((.(((((....))))).))..)))))))..)))).))) ( -40.30, z-score = -2.05, R) >droPer1.super_14 749456 79 + 2168203 --------GGUGUGUGUGAGCGGUGGGGAGGGGA---GAGGCAGUAGCCUUCGAAGCUGACGCUGACGCUGGCAUCGACAUCGACAUCGA------------------ --------(((((((((.((((..(((..((...---(((((....))))).....))..).))..)))).))))..)))))........------------------ ( -25.60, z-score = 0.19, R) >droAna3.scaffold_13117 1469406 86 - 5790199 UGACGCUUAGUUAGCACGGGGGGCGUGAGUGGGU---GGUG-GGUGGUGGUUAACGGUAACGGUAACGGUAAAGUUAACGCUCGCAGCGA------------------ ...((((((.(((((.......)).))).)))))---)(((-(((....((((((..((.((....)).))..)))))))))))).....------------------ ( -23.90, z-score = -0.38, R) >droEre2.scaffold_4690 6975180 103 + 18748788 ----UGGUGAUGUGGGUG-GCUCUGCGGGCGGAUUCCACGGCCAUAUCCUUCGAUGCCGACGUUGACGGUAGCGUUAGCGUUAACGGCAAAGUUUACGCUGGCAGCGA ----.((.((((((((((-(.((((....))))..))))..)))))))))(((.(((((((((((....)))))))(((((.(((......))).))))))))).))) ( -40.30, z-score = -0.98, R) >droYak2.chrX 9447480 89 - 21770863 ----UGGUGAUGUGGGUG-GCUCUGCG----------AUGCUGAUG----CUGAUGCUGACGUUGACGGUGGCGUUAACGUUAACGGUAAAGAUAACGCUGGCAGCGA ----...((.(((.((((-..(((...----------.(((((..(----(....))(((((((((((....))))))))))).))))).)))...)))).))).)). ( -28.90, z-score = -1.45, R) >droSec1.super_56 135996 103 - 192059 ----UGGUGAUGUGGGUG-GCUCUGCGGACGGAUUCCAUGGCCAUAUCCUUCGAUGCUAACGUUGACGGUGGCGUUAACGUUAACGGUAAAGUUAACGCUGGCAGCGA ----.((.((((((((((-(.((((....))))..))))..)))))))))(((.(((((.(((((((..((.(((((....))))).))..))))))).))))).))) ( -39.20, z-score = -2.20, R) >droSim1.chrX 11770037 103 - 17042790 ----UGGUGAUGUGGGUG-GCUCUGCGGGCGGAUUCCAUGGCCAUAUCCUUCGAUGCUGACGUUGACGGUGGCGUUAACGUUAACGGUAAAGUUAACGCUGGCAGCGA ----.((.((((((((((-(.((((....))))..))))..)))))))))(((.((((..(((((((..((.(((((....))))).))..)))))))..)))).))) ( -40.30, z-score = -2.05, R) >consensus ____UGGUGAUGUGGGUG_GCUCUGCGGGCGGAUUCCAUGGCCAUAUCCUUCGAUGCUGACGUUGACGGUGGCGUUAACGUUAACGGUAAAGUUAACGCUGGCAGCGA ..........(((.((((..((.(((.............((......))......(.(((((((((((....))))))))))).).))).))....)))).))).... (-11.79 = -13.71 + 1.93)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:00 2011