| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,239,904 – 15,239,957 |
| Length | 53 |
| Max. P | 0.939191 |
| Location | 15,239,904 – 15,239,957 |
|---|---|
| Length | 53 |
| Sequences | 3 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 54.75 |
| Shannon entropy | 0.59363 |
| G+C content | 0.33653 |
| Mean single sequence MFE | -13.07 |
| Consensus MFE | -5.53 |
| Energy contribution | -7.53 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.939191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15239904 53 + 22422827 -------UGAUUGGGUUAUGUG---UGAAAACGUCACGUUUUCAACCAUAUGAGAUCCAAUUU -------.((((((((((((((---((((((((...))))))))..)))))..))))))))). ( -17.30, z-score = -3.34, R) >droSim1.chrX 11760417 52 + 17042790 -------UGAUUGGAUUAUGUG---UGAAAACGUCACGUUUUCAACCGU-UCAGAACCAAUUU -------.((((((...(((..---((((((((...))))))))..)))-......)))))). ( -12.80, z-score = -1.68, R) >droGri2.scaffold_15081 822671 63 - 4274704 UGAUCUUGGAAAAAGUUUUCCAAAUUUUAUGCAACUCGUUUUAACAAAUAUUCGAUGAGACUU .....(((((((....)))))))...........((((((.............)))))).... ( -9.12, z-score = -0.68, R) >consensus _______UGAUUGGGUUAUGUG___UGAAAACGUCACGUUUUCAACCAUAUCAGAUCCAAUUU ........(((((((((........(((((((.....))))))).........))))))))). ( -5.53 = -7.53 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:59 2011