Locus 14751

Sequence ID dm3.chrX
Location 15,236,138 – 15,236,225
Length 87
Max. P 0.999914
window20300 window20301

overview

Window 0

Location 15,236,138 – 15,236,225
Length 87
Sequences 5
Columns 89
Reading direction forward
Mean pairwise identity 65.00
Shannon entropy 0.63266
G+C content 0.38014
Mean single sequence MFE -27.72
Consensus MFE -11.74
Energy contribution -12.42
Covariance contribution 0.68
Combinations/Pair 1.45
Mean z-score -4.10
Structure conservation index 0.42
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 4.86
SVM RNA-class probability 0.999914
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15236138 87 + 22422827
UUAGAGGCGGAGAAACUUUUUACGCCAACAUCGAUGACAUCGAUGUUUUCGAAAUAUCAGAAA-CAUCGAUGUUUUUCUAGGAAUGUU-
(((((((((.............)))).........(((((((((((((..((....))..)))-))))))))))..))))).......- ( -27.62, z-score =  -4.11, R)
>droYak2.chr3L 279695 87 - 24197627
UUAGUGAUGGGCAUAUGACG-AUGCCAAAAACAAUGUCAUCGAUGUUUUGUAAACAUCGGCAA-UAUAUAUGUGAAGCUCAAUAUUAAA
((((((.(((((..((((((-.((.......)).))))))(((((((.....)))))))....-............))))).)))))). ( -22.00, z-score =  -2.19, R)
>droSec1.super_56 123725 87 + 192059
CUAAAGGCGGAGAAACAUUG-ACGCCAACAUCGAUGACAUCGAUGUCUACGAAAAAUCACAGU-CAUCGAUGUUAUUCGAGAAAUCAUC
.....((((..((....)).-.))))....(((((((((((((((.((..((....))..)).-))))))))))).))))......... ( -28.60, z-score =  -4.23, R)
>droSim1.chrX 11759212 87 + 17042790
CUAAAGGCGGAGAAACAUUG-ACGCCAACAUCGAUGACAUCGAUGUCUACGAAAAAUCACAGU-CAUCGAUGUUAUUCGAGGAAUCAUC
.....((((..((....)).-.))))....(((((((((((((((.((..((....))..)).-))))))))))).))))......... ( -28.60, z-score =  -3.94, R)
>droWil1.scaffold_181108 3252493 86 - 4707319
UUAGAGCUGGAAAAAACAACGAUGGUACUAUCGAUG-CAUCGAUGGUUUUGUAUUUUUAUAAAACAUCGAUGUUUGGCCAGCACAUA--
.....(((((...(((((.(((((..((((((((..-..))))))))((((((....)))))).))))).)))))..))))).....-- ( -31.80, z-score =  -6.03, R)
>consensus
UUAGAGGCGGAGAAACAUUG_ACGCCAACAUCGAUGACAUCGAUGUUUUCGAAAAAUCACAAA_CAUCGAUGUUAUUCGAGAAAUCAU_
.....((((.............))))((((((((((.....((((((.....))))))......))))))))))............... (-11.74 = -12.42 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 15,236,138 – 15,236,225
Length 87
Sequences 5
Columns 89
Reading direction reverse
Mean pairwise identity 65.00
Shannon entropy 0.63266
G+C content 0.38014
Mean single sequence MFE -22.12
Consensus MFE -6.60
Energy contribution -6.48
Covariance contribution -0.12
Combinations/Pair 1.33
Mean z-score -2.52
Structure conservation index 0.30
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.59
SVM RNA-class probability 0.952958
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15236138 87 - 22422827
-AACAUUCCUAGAAAAACAUCGAUG-UUUCUGAUAUUUCGAAAACAUCGAUGUCAUCGAUGUUGGCGUAAAAAGUUUCUCCGCCUCUAA
-((((((....((...(((((((((-(((.(((....))).))))))))))))..))))))))((((.............))))..... ( -24.32, z-score =  -4.19, R)
>droYak2.chr3L 279695 87 + 24197627
UUUAAUAUUGAGCUUCACAUAUAUA-UUGCCGAUGUUUACAAAACAUCGAUGACAUUGUUUUUGGCAU-CGUCAUAUGCCCAUCACUAA
........((.((............-....(((((((.....)))))))(((((..(((.....))).-.)))))..)).))....... ( -16.00, z-score =  -1.25, R)
>droSec1.super_56 123725 87 - 192059
GAUGAUUUCUCGAAUAACAUCGAUG-ACUGUGAUUUUUCGUAGACAUCGAUGUCAUCGAUGUUGGCGU-CAAUGUUUCUCCGCCUUUAG
.........((((...(((((((((-.((((((....)))))).)))))))))..))))((..((((.-...........))))..)). ( -24.70, z-score =  -1.86, R)
>droSim1.chrX 11759212 87 - 17042790
GAUGAUUCCUCGAAUAACAUCGAUG-ACUGUGAUUUUUCGUAGACAUCGAUGUCAUCGAUGUUGGCGU-CAAUGUUUCUCCGCCUUUAG
.........((((...(((((((((-.((((((....)))))).)))))))))..))))((..((((.-...........))))..)). ( -24.70, z-score =  -1.93, R)
>droWil1.scaffold_181108 3252493 86 + 4707319
--UAUGUGCUGGCCAAACAUCGAUGUUUUAUAAAAAUACAAAACCAUCGAUG-CAUCGAUAGUACCAUCGUUGUUUUUUCCAGCUCUAA
--...(.(((((..(((((.(((((...(((....)))....((.(((((..-..))))).))..))))).)))))...))))).)... ( -20.90, z-score =  -3.37, R)
>consensus
_AUAAUUCCUAGAAUAACAUCGAUG_UUUCUGAUAUUUCGAAAACAUCGAUGUCAUCGAUGUUGGCGU_CAAUGUUUCUCCGCCUCUAA
..........................................(((((((((...))))))))).......................... ( -6.60 =  -6.48 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:59 2011