| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,427,659 – 11,427,731 |
| Length | 72 |
| Max. P | 0.514688 |
| Location | 11,427,659 – 11,427,731 |
|---|---|
| Length | 72 |
| Sequences | 7 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 70.91 |
| Shannon entropy | 0.59527 |
| G+C content | 0.60805 |
| Mean single sequence MFE | -23.86 |
| Consensus MFE | -13.14 |
| Energy contribution | -13.84 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.56 |
| Mean z-score | -0.60 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.514688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11427659 72 - 23011544 GAGCCUAGCC---CAUCUGGCAAUCGACUGGCAACCGUCGCCGGCUGCACAGGUGCAAAUCUCUAUGGGUGAACC .......(((---((((((((....(((.(....).)))))))).((((....)))).......))))))..... ( -22.50, z-score = -0.30, R) >droSim1.chr2L 11236850 72 - 22036055 GAGCCUAGCC---CAUCUGGCAAUCGACUGGCGACCGUCGCCGGCUGCACAGGUGCAAAUCUCAAUGGGUGAACU ..(((((...---(((((((((...(.((((((.....)))))))))).))))))..........)))))..... ( -23.22, z-score = -0.32, R) >droSec1.super_3 6822567 72 - 7220098 GAGCCUAGCC---CAUCUGGCAAUCGACUGGCGACCGUCGCCGGCUGCACAGGUGCAAAUCUCUAUGGGCGAACC ..(((((...---(((((((((...(.((((((.....)))))))))).))))))..........)))))..... ( -25.52, z-score = -0.92, R) >droYak2.chr2L 7827778 75 - 22324452 GAGCCUAGCCCAGCAUCUGGCCAUCGACAGGCGACCGUUGCCUGCUGCACAGGUGCAAAUCGCUAUAGGUGAUAC ..(((((((...(((((((((....(.(((((((...)))))))).)).))))))).....)))..))))..... ( -26.00, z-score = -1.02, R) >droEre2.scaffold_4929 12629316 75 + 26641161 GAGCCUAGCCCAGCAUCUGGCAAUCGACUGGCGACCGUCGCCGGCUGCACAGGUGCAAAUUUCUAUAGGGGAUUC ........(((.((((((((((...(.((((((.....)))))))))).)))))))......(....)))).... ( -27.00, z-score = -1.27, R) >droAna3.scaffold_12916 12133789 73 + 16180835 GAGCCUAGCCCAGCAUUUAGCCAUCGAUUGGCGACCGUCGCCGACUUCACAGGUGCGAGCCCAGGUGAGCGCC-- ..((((.(((..((.....((((.....))))...((.((((.........)))))).))...))).)).)).-- ( -21.10, z-score = -0.03, R) >dp4.Unknown_singleton_1743 1047 71 - 2278 GAGCCGAGCGCACCUCUUAAUUGCCG-CCAACAAAAGGCACCACUGGGCCUAGACCCAGCCUCUGGUGCAGG--- .........(((((.......((((.-.........))))...(((((......))))).....)))))...--- ( -21.70, z-score = -0.31, R) >consensus GAGCCUAGCCCA_CAUCUGGCAAUCGACUGGCGACCGUCGCCGGCUGCACAGGUGCAAAUCUCUAUGGGUGAACC ..((((((((........)))......((((((.....)))))).((((....))))........)))))..... (-13.14 = -13.84 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:38 2011