Locus 14749

Sequence ID dm3.chrX
Location 15,197,014 – 15,197,115
Length 101
Max. P 0.505778
window20298

overview

Window 8

Location 15,197,014 – 15,197,115
Length 101
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 87.54
Shannon entropy 0.17106
G+C content 0.30593
Mean single sequence MFE -18.65
Consensus MFE -13.29
Energy contribution -12.97
Covariance contribution -0.33
Combinations/Pair 1.18
Mean z-score -2.03
Structure conservation index 0.71
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.02
SVM RNA-class probability 0.505778
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15197014 101 + 22422827
AUAUUUUGUGCAACCGCAUAGCUUAGAAGAGGUGUCAAGUUUAAGGAAAUAUAUAAAACGACACCAUUUGAAGAAUAUUUAAAAAGU-UGAUAAAAACGAUA
...((((((((....)).((((((......((((((...((((..........))))..)))))).((((((.....))))))))))-))))))))...... ( -16.50, z-score =  -1.52, R)
>droYak2.chrX 9398029 102 + 21770863
ACAUUUUGUGCAACCGCACAGCUUAGAUGAGGUGUCAAGUUUAAGUAAAUAUAUAAACCGAUACCACCUGAAGAAUAUUAAAAAAAUAUCAUCAAAAUGAUA
.((((((((((....))))......(((((((((((..(((((.((....)).))))).))))))..........((((.....)))))))))))))))... ( -23.00, z-score =  -3.95, R)
>droSim1.chrX 11719582 101 + 17042790
AUAUUUUGUGCAACCGCAUAGCUUAGAAGAGGUGUCAAGUUCAAGGAAGUAUAUAAACCGACACCAUCUGAAUAAUAUUUUAAGAGU-UGAUAAAAACGAUA
.....((((((....))))))(((((((((((((((..(((..............))).)))))).))).........)))))).((-(......))).... ( -16.44, z-score =  -0.63, R)
>consensus
AUAUUUUGUGCAACCGCAUAGCUUAGAAGAGGUGUCAAGUUUAAGGAAAUAUAUAAACCGACACCAUCUGAAGAAUAUUUAAAAAGU_UGAUAAAAACGAUA
.....((((((....)))))).(((((...((((((.......................)))))).)))))............................... (-13.29 = -12.97 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:56 2011