| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,195,939 – 15,196,068 |
| Length | 129 |
| Max. P | 0.917171 |
| Location | 15,195,939 – 15,196,068 |
|---|---|
| Length | 129 |
| Sequences | 8 |
| Columns | 152 |
| Reading direction | reverse |
| Mean pairwise identity | 74.32 |
| Shannon entropy | 0.46810 |
| G+C content | 0.42759 |
| Mean single sequence MFE | -36.87 |
| Consensus MFE | -17.97 |
| Energy contribution | -17.25 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.917171 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15195939 129 - 22422827 -----UGGCUAAUCUAAGUCAAAUCGAUUUAAUUAGCAUAGCUGCCUAAGAUGGCGUCAAGCUAUCUCGG---CUAUAUGCGA-----UCCAAUCAG----GCAUGCUAAAUUCGCCUCCAAUUAAGAUU------CGAUUUAUCGAUAAAC -----(((((......))))).((((((.......(((((...(((..(((((((.....))))))).))---)..)))))((-----((.((((((----((...........))))........))))------.)))).)))))).... ( -35.90, z-score = -2.73, R) >droPer1.super_53 200792 134 - 525408 -------ACCGAUCCAGACUAUACUGAUUCGAUUAGAAUACCAUCCUAAGAUGGCGUCAAGCUAUCUCAGAUCCUAUGUUCGGGA-CCCCCUCUCUC----ACCAUUAAAAUUCUCAACCAAUUAAGAUU------CGAUCCAUCGAUAAAC -------..(((..(((......)))..)))...(((((......((.(((((((.....))))))).)).((((......))))-...........----.........)))))..............(------(((....))))..... ( -23.30, z-score = -0.44, R) >dp4.chr3 11659108 134 + 19779522 -------ACCGAUCCAGACUAUACUGAUUCGAUUCGAAUACCAUCCUAAGAUGGCGUCAAGCUAUCUCAGAUUCUAUGUUCGGGA-CCCCCUCUCUC----ACCAUUAAAAUUCUCAACCAAUUAAGAUU------CGAUCCAUCGAUAAAC -------..((((.(((......)))..((((.(((((((.....((.(((((((.....))))))).))......)))))(((.-..)))......----.........................)).)------)))...))))...... ( -25.30, z-score = -1.01, R) >droAna3.scaffold_13117 1411796 149 - 5790199 GGCUGGCGCUGAUCUGGAGGAAUUUGAUUUAAUUAGCG-GGCAGCCUAAGAUGGCGUCAAGCUAUCUCGGUAGGAGGGCCCCCCAGCCCCCAAUCCCUGGGGGAACUGCGCUUCCCAGCGAGCUAUCGCUUCCCAGCGCUUUAUCGAUAA-- (((((.(((((((.((((.........)))))))))).-).)))))...((((((.....))))))((((((((.((..(((((((..........)))))))..))(((((....(((((....)))))....)))))))))))))...-- ( -60.00, z-score = -0.78, R) >droEre2.scaffold_4690 6924226 129 + 18748788 -----UGGCUAAUCUAAGCCAAAUCGAUUUAAUUAGCAUAGCUGGCUAAGAUGGCGUCAAGCUAUCUCGG---CAAUAUGCGA-----UCCAAUCAG----GCAUGCUAAAUUCGCCUCCAAUUAAGAUU------CGAUUUAUCGAUAAAC -----(((((......))))).((((((.......(((((....((..(((((((.....)))))))..)---)..)))))((-----((.((((((----((...........))))........))))------.)))).)))))).... ( -39.40, z-score = -3.40, R) >droYak2.chrX 9397036 129 - 21770863 -----UGGCUAAUCUAAGCCAAAUCGAUUUGAUUAGCAUAGCUGCCUAAGAUGGCGUCAAGCUAUCUCGG---CUAUAUGCGA-----UCCAAUCAG----GCAUGCUAAAUUCGCCUCCAAUUAAGAUU------CGAUUUAUCGAUAAAC -----(((((......))))).(((((((.((((.(((((...(((..(((((((.....))))))).))---)..)))))))-----)).))))((----((...........))))........)))(------(((....))))..... ( -39.30, z-score = -3.16, R) >droSec1.super_56 84170 129 - 192059 -----UGGCUAAUCUAAGUCAAAUCGAUUUAAUUAGCAUAGCUGCCUAAGAUGGCGUCAAGCUAUCUCGG---CUAUAUGCGA-----UCCAAUCAG----GCAUGCAAGAUUCGCCUCCAAUUAAGAUU------CGAUUUAUCGAUAAAC -----(((((......))))).((((((.......(((((...(((..(((((((.....))))))).))---)..)))))((-----((.((((((----((...........))))........))))------.)))).)))))).... ( -35.90, z-score = -2.44, R) >droSim1.chrX 11718578 129 - 17042790 -----UGGCUAAUCUAAGUCAAAUCGAUUUAAUUAGCAUAGCUGCCUAAGAUGGCGUCAAGCUAUCUCGG---CUAUAUGCGA-----UCCAAUCAG----GCAUGCUAAAUUCGCCUCCAAUUAAGAUU------CGAUUUAUCGAUAAAC -----(((((......))))).((((((.......(((((...(((..(((((((.....))))))).))---)..)))))((-----((.((((((----((...........))))........))))------.)))).)))))).... ( -35.90, z-score = -2.73, R) >consensus _____UGGCUAAUCUAAGCCAAAUCGAUUUAAUUAGCAUAGCUGCCUAAGAUGGCGUCAAGCUAUCUCGG___CUAUAUGCGA_____UCCAAUCAG____GCAUGCUAAAUUCGCCUCCAAUUAAGAUU______CGAUUUAUCGAUAAAC ......................((((((..((((.(((((.....((.(((((((.....))))))).))......)))))((.....))...............................................)))).)))))).... (-17.97 = -17.25 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:55 2011