| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,193,826 – 15,193,944 |
| Length | 118 |
| Max. P | 0.847097 |
| Location | 15,193,826 – 15,193,944 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.86 |
| Shannon entropy | 0.35715 |
| G+C content | 0.40792 |
| Mean single sequence MFE | -24.80 |
| Consensus MFE | -15.53 |
| Energy contribution | -16.25 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.847097 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15193826 118 - 22422827 CACUCAACAAUACAC--CAACAACGGUUCACCAACAGCUGCUAAGCUCGAACGUUUCAACAAUAUUAAUUUUGCGCUUGGUGGUUGGUCGGUUGUUGAAACUAUAUCUACACUCCAAUGC ...((((((....((--(.((...((....))..((((..((((((.((((.(((...........))))))).))))))..)))))).)))))))))...................... ( -28.60, z-score = -2.16, R) >droSim1.chrX 11716514 118 - 17042790 AAUUCAACAAUACAC--CAACAACGGUUCACCUACAGCUGCUAAGCUCGAACGUUCCAACAAUAUUAAUUUUGCGCUCGGUGGUUGGUCUGUUGUUGAAACUCUAUCUACACUCUAAUGC ..((((((((((.((--((((.((((....))...((((....))))(((.(((..................))).))))).)))))).))))))))))..................... ( -29.37, z-score = -3.25, R) >droSec1.super_56 82061 118 - 192059 AAAUCAACAAUACAC--CAACAACGGUUCACCAUCAGCUGCUAAGCUCGAACGUUCCAACAAUAUUAAUUUCGCGCUCGGUGGUUGGUCGGUUGUUGAAACUCUAUCUACACUCCAAUGC ...((((((....((--(......)))..(((((((((..(..(((.((((..................)))).)))..)..)))))).)))))))))...................... ( -29.27, z-score = -2.86, R) >droYak2.chrX 9395010 103 - 21770863 AAUUCAACAAUACAC--CAACCACUGUUCACCAACAGCUGCUAAACUCGAACGUUCCAACAAUAUUCAUUUUGCGCUCAGAAAUUG----AUUGUUGAAACUGCA-GUGC---------- ..(((((((((.((.--....(((((((....))))).))........((.(((..................))).))......))----)))))))))......-....---------- ( -14.37, z-score = 0.24, R) >droEre2.scaffold_4690 6922203 105 + 18748788 AAUUCAACAAUACACGUUGGUGUAUGUUCACCAACAGCGGCUAAGCUUAAACGUUCCAACAAUAUUAAUUUUGCGCUUAGAAAUUG----AUUGUGGAAACUACA-CUAC---------- ...............(((((((......)))))))(((......)))......(((((.((..(((((((((.......)))))))----)))))))))......-....---------- ( -22.40, z-score = -1.60, R) >consensus AAUUCAACAAUACAC__CAACAACGGUUCACCAACAGCUGCUAAGCUCGAACGUUCCAACAAUAUUAAUUUUGCGCUCGGUGGUUGGUC_GUUGUUGAAACUAUAUCUACACUC_AAUGC ...((((((((.............((....))..((((((((.(((.((((..................)))).))).))))))))....))))))))...................... (-15.53 = -16.25 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:54 2011