Locus 14745

Sequence ID	dm3.chrX
Location	15,185,598 – 15,185,690
Length	92
Max. P	0.923633

overview

Window 4

Location	15,185,598 – 15,185,690
Length	92
Sequences	4
Columns	92
Reading direction	reverse
Mean pairwise identity	72.73
Shannon entropy	0.41744
G+C content	0.55287
Mean single sequence MFE	-23.05
Consensus MFE	-16.71
Energy contribution	-16.65
Covariance contribution	-0.06
Combinations/Pair	1.33
Mean z-score	-1.54
Structure conservation index	0.73
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.30
SVM RNA-class probability	0.923633
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15185598 92 - 22422827
GUCGCUAAUCACCAGCUGUGAGAAAGUCGUCCUGCGAAGGGAGAAAGCACAGAGAGUGUGGAGCGGAGAAACGGAGAGGGAGCAGCGAAAGU
.(((((...(((...(((((......((..(((....)))..))...)))))...)))...)))))..................((....)) ( -25.30, z-score =  -1.01, R)
>droSim1.chrX 11708359 70 - 17042790
GUCGCUAAUCACCAGCUGUGAGAAAGUCGUCCUGCGAAGGGAGAAAGCACGGAGAGGGAGCAGCGAAAAU----------------------
.(((((..((.((..(((((......((..(((....)))..))...)))))...))))..)))))....---------------------- ( -23.60, z-score =  -2.40, R)
>droSec1.super_56 73917 70 - 192059
GUCGCUAAUCACCAGCUGUGAGAAAGUCGUCUUGCGAAGGGAGAAAGCACGGAGAGGGAGCAGCGAAAGU----------------------
.(((((..((.((..(((((......((..(((....)))..))...)))))...))))..)))))....---------------------- ( -20.90, z-score =  -1.36, R)
>droYak2.chrX 9387097 77 - 21770863
GUCGCUAAUCACCAGCUGUGAGAAAGUCGUCCCGCGAAGGGAGAAAGCA---GCAAGGAGCGGUGAAAGUGGGAGAGAGC------------
.(((((..(((((.(((.((......((.((((.....)))))).....---.))...)))))))).)))))........------------ ( -22.40, z-score =  -1.38, R)
>consensus
GUCGCUAAUCACCAGCUGUGAGAAAGUCGUCCUGCGAAGGGAGAAAGCACGGAGAGGGAGCAGCGAAAAU______________________
.(((((..((.....(((((......((.((((.....))))))...))))).....))..))))).......................... (-16.71 = -16.65 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:52 2011