| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,184,813 – 15,184,885 |
| Length | 72 |
| Max. P | 0.892564 |
| Location | 15,184,813 – 15,184,885 |
|---|---|
| Length | 72 |
| Sequences | 8 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 82.76 |
| Shannon entropy | 0.35520 |
| G+C content | 0.41668 |
| Mean single sequence MFE | -15.03 |
| Consensus MFE | -10.89 |
| Energy contribution | -10.93 |
| Covariance contribution | 0.05 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.892564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15184813 72 + 22422827 UGUGUGGCCCCGAUUACAGUUUAGUAGCUGUAAAUAUA-AAGCGAUAUAUACUAACCCCUGCACUAAGAGAAA .(((..(......((((((((....))))))))(((((-......)))))........)..)))......... ( -13.70, z-score = -1.56, R) >droSim1.chrX 11707587 72 + 17042790 UGUGUGGCCCCGAUUACAGUUUAGUAGCUGUAAAUAUA-AAGCGAUAUAUACUAACCCCUGCACCGAGAGAAA .(((..(......((((((((....))))))))(((((-......)))))........)..)))......... ( -13.30, z-score = -1.62, R) >droSec1.super_56 73146 72 + 192059 UGUGUGGCCCCGAUUACAGUUUAGUAGCUGUAAAUAUA-AAGCGAUAUAUACUAACCCCUGCACCGAGAGAAA .(((..(......((((((((....))))))))(((((-......)))))........)..)))......... ( -13.30, z-score = -1.62, R) >droYak2.chrX 9386267 72 + 21770863 UGUGUGGCCCCGAUUACAGUUUAGUAGCUGUAAAUAUA-AAGCGAUAUAUACUCACCCCUACACCUAGAGAAA .((((((......((((((((....))))))))(((((-......)))))........))))))......... ( -14.20, z-score = -1.84, R) >droEre2.scaffold_4690 6913393 72 - 18748788 UGUGUGGCCCCGAUUACAGUUUAGUAGCUGUAAAUAUA-AAGCGAUAUAUACUCACCCCUACACCGGGAGAAA (((((.((.....((((((((....)))))))).....-..)).)))))..(((.((........)))))... ( -16.00, z-score = -1.18, R) >droAna3.scaffold_13117 1399983 72 + 5790199 UGUGUGGCCCCGAUUACAGUUUAGUAGCUGUAAAUACA-AAGCGAAAUACACACAGCGCCACACUGGAAGAAA .(((((((.....((((((((....)))))))).....-..((............)))))))))......... ( -21.30, z-score = -3.14, R) >dp4.chrXL_group1a 7547378 55 - 9151740 UGUGUGGCCCCGAUUACAGUUUAGUAGCUGUAAAUAUA-AAGCGUUAUAUACAGAC----------------- (((((((((....((((((((....)))))))).....-..).)))))))).....----------------- ( -10.40, z-score = -0.83, R) >droVir3.scaffold_13042 2142555 62 + 5191987 UGUGUGGCCC-GAUUACAGUUUAGUAGCUGUAAAUAUAUAGGCGACACACACACACACACGCA---------- (((((.(((.-..((((((((....)))))))).......))).)))))..............---------- ( -18.00, z-score = -2.22, R) >consensus UGUGUGGCCCCGAUUACAGUUUAGUAGCUGUAAAUAUA_AAGCGAUAUAUACUCACCCCUGCACCGAGAGAAA (((((.((.....((((((((....))))))))........)).)))))........................ (-10.89 = -10.93 + 0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:52 2011