| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,171,074 – 15,171,258 |
| Length | 184 |
| Max. P | 0.539605 |
| Location | 15,171,074 – 15,171,258 |
|---|---|
| Length | 184 |
| Sequences | 4 |
| Columns | 184 |
| Reading direction | forward |
| Mean pairwise identity | 91.93 |
| Shannon entropy | 0.12992 |
| G+C content | 0.54708 |
| Mean single sequence MFE | -44.11 |
| Consensus MFE | -35.40 |
| Energy contribution | -37.27 |
| Covariance contribution | 1.87 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.539605 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15171074 184 + 22422827 CCCCUCGCACCGGCCGCAUCAUCUGACCAAACAUCCCGACAUCCCCGGCCUCAGCAAUGACUCCUCAGCCUCACCUAAUCAGAUGCUAAGCCUGGCCAGAUGUCCUCACAAUUCGUUAACCGAUUUUACCGAUUCCAGCCCAUUCUGGCCAUAAAGAACCUAACGCUAUUGCGGCUUUCCAAUC ...........(((((((.(((((((.........(((.......)))..(((....)))..................))))))).......((((((((((..((......(((.(((......))).)))....))..)).))))))))..................)))))))........ ( -41.20, z-score = -2.04, R) >droSim1.chrX_random 3972255 184 + 5698898 CCCCUCGCAUCGGCCGCAUCAUCUGACCAAACAUCCCGGCAUCCCCGGCCUCAGCAAUGACUCCUCAGCCUCACCUAAUCAGGUGCUAAGCCUGGCCAGAUGUCCUCACAAUCCGUUAACCGAUUUUACCGAUUCCAGCCCAUCCUGGCCAUAAAGAACCUGACGCUUUUGCGGCUUUCCAAUC ...........(((((((....((((.........((((.....))))..(((....)))....))))..........((((((.((.....((((((((((..((...((((.((...........)).))))..))..))).)))))))...)).))))))......)))))))........ ( -46.90, z-score = -1.85, R) >droSec1.super_56 59633 183 + 192059 CCCCUCGCACCGGCCGCAUUAUCUGACCAAACAUCCCGGCAUCCCCGGCCUCAGCAAUGAC-CCUCAGCCUCACCUAAUCAGGUGUUAAGCCUGGCCAGAUGUCCUCACCAUUCGUUAACCGAUUUUACCGAUUCCAGCCCAUCCUGGCCAUAAAGAACCUGACGCUUUUGCGGCUUUCCAAUC ...........(((((((....((((.........((((.....))))..(((....))).-..))))..........((((((........((((((((((..((......(((.(((......))).)))....))..))).)))))))......))))))......)))))))........ ( -46.24, z-score = -1.88, R) >droYak2.chrX 9371159 182 + 21770863 CCCCUCACAUCGCCCGCAUCAUCUGACCAAACAUCCCGGCAUUCCCGGCACCAUCAGCAGU--CUCAGCCUCACCUAAUCAGGUGCUAAGCCCGGCCAGAUGUCCUCACAAUUCGUUAACCGAUUUUACCGAUUUCAGCCCAGCCUGGCCAUAAACAACCAGACGCUUGUGCGGCUUUCCAAUC ...........(((((((.(.((((............(((......(((............--....))).(((((....)))))....))).((((((.((..((......(((.(((......))).)))....))..))..)))))).........)))).)..)))).)))......... ( -42.09, z-score = -1.47, R) >consensus CCCCUCGCACCGGCCGCAUCAUCUGACCAAACAUCCCGGCAUCCCCGGCCUCAGCAAUGAC_CCUCAGCCUCACCUAAUCAGGUGCUAAGCCUGGCCAGAUGUCCUCACAAUUCGUUAACCGAUUUUACCGAUUCCAGCCCAUCCUGGCCAUAAAGAACCUGACGCUUUUGCGGCUUUCCAAUC ...........(((((((.(((((((.........((((.....))))..(((....)))..................)))))))........(((((((((..((......(((.(((......))).)))....))..))).))))))...................)))))))........ (-35.40 = -37.27 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:50 2011