| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,169,331 – 15,169,439 |
| Length | 108 |
| Max. P | 0.522437 |
| Location | 15,169,331 – 15,169,439 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 73.67 |
| Shannon entropy | 0.46965 |
| G+C content | 0.39241 |
| Mean single sequence MFE | -25.16 |
| Consensus MFE | -12.08 |
| Energy contribution | -11.72 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.522437 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15169331 108 + 22422827 -UCAUUCUUAGCUGGCAAUCUGCUCAAAAGUAUUUACAUUCGAUUGCCAACAGUGGCA--UCGUCAUAU--GCAGCUAUAGAAAAUGUUAUAAUACGCACUUAUCUGACAUUA -...((((((((((((.....)).............(((.((((.((((....)))))--)))....))--))))))).))))(((((((...............))))))). ( -23.46, z-score = -1.40, R) >droSim1.chrX_random 3969802 108 + 5698898 -UCAUUCUAAGCUGCCAAUCUGCUCAAAAGUAUUUACAUUCGAUUGCCAACACUGGCA--CAGUCAUAU--GCAGCUAUUGAAAAUGUUAUAAUACGCACUUAUGUGACAUUA -...(((..((((((.....((((....)))).........((((((((....)))))--..)))....--))))))...)))(((((((((...........))))))))). ( -24.30, z-score = -1.76, R) >droSec1.super_56 57954 108 + 192059 -UCAUUCUUAGCUGCCAAUCUGCUCAAAAGUAUUUACAUUCGAUUGCCAACACUGGCA--CAGUCAUAU--GCAGCUAUUGAAAAUGUUAUAAUACGCACUUAUGUGACAUUA -...(((.(((((((.....((((....)))).........((((((((....)))))--..)))....--)))))))..)))(((((((((...........))))))))). ( -25.90, z-score = -2.30, R) >droYak2.chrX 9369396 111 + 21770863 -UCAUUCUUAGCUGGCAAUCUGCUCGCAAGUAUUUACAUUCGAUUGCCAGCACUGGCAAGCAGCUAUAGAAGAAGUUAU-GUAACUUUUCAAAAACGCACUUGUGGGCCAUUA -.........((((((((((((....)).((....))....))))))))))..((((..(((((......(((((((..-..))))))).......))...)))..))))... ( -30.12, z-score = -1.48, R) >droEre2.scaffold_4690 6898822 84 - 18748788 CUCAUUGCUGGCUGGCAAUCUGCGCAGCAGUGUUUACACUCGAUUGCCAACUCUGGCAA-CAGUUAUAGACAACGUUAAAGAACA---------------------------- ....((((..(.(((((((((((...)))(((....)))..))))))))...)..))))-..............(((....))).---------------------------- ( -22.00, z-score = -0.69, R) >consensus _UCAUUCUUAGCUGGCAAUCUGCUCAAAAGUAUUUACAUUCGAUUGCCAACACUGGCA__CAGUCAUAU__GCAGCUAUAGAAAAUGUUAUAAUACGCACUUAUGUGACAUUA ........(((((((((((((((......))).........))))))))....((((.....))))........))))................................... (-12.08 = -11.72 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:49 2011