| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,167,700 – 15,167,786 |
| Length | 86 |
| Max. P | 0.972857 |
| Location | 15,167,700 – 15,167,786 |
|---|---|
| Length | 86 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 78.56 |
| Shannon entropy | 0.37011 |
| G+C content | 0.55686 |
| Mean single sequence MFE | -32.68 |
| Consensus MFE | -23.42 |
| Energy contribution | -23.70 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.88 |
| SVM RNA-class probability | 0.972857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15167700 86 - 22422827 UCACUGCCGGUCCAAUGAGUCGU---CGUCUCAUUGUGAACCGGAUCCGGAUGUGGAU--ACAGCUAUGGCCACGUUGACAAAAUUGGGCU ......(((((((((((((....---...))))))).).))))).(((((((((((..--.((....)).)))))))........)))).. ( -26.50, z-score = -0.47, R) >droSim1.chrX_random 3969311 86 - 5698898 UCACUGCCGGUCCAAUGAGUCGU---CGGCUCAUUGAGAACCGGAUCCGGAUGUGGAU--ACAGCUACGGCCACGUUGACAAAACUGGGGU ......((((((((((((((...---..)))))))).).))))).(((((.(((.(((--...((....))...))).)))...))))).. ( -32.20, z-score = -1.74, R) >droSec1.super_56 57466 77 - 192059 UCACUGCCGGUCCAAUGAGUCGU---CGGCUCAUUGAGAACCGGAUCCGGAUGUGGAU--ACAGCUACGGCCACGUUGGGGU--------- ......((((((((((((((...---..)))))))).).)))))((((.(((((((..--.(......).))))))).))))--------- ( -34.30, z-score = -2.67, R) >droYak2.chrX 9368868 77 - 21770863 UCACUGCCGGUCCAAUGA---GU---UGGCUCAUUGUGCGCCGGAUCCGGAUGUGGAUACACAUCCAUGUCCACGGUGACAAA-------- ((((((((((((((((((---(.---...))))))).).)))))....((((((((((....)))))))))).))))))....-------- ( -37.60, z-score = -4.26, R) >droEre2.scaffold_4690 6898343 89 + 18748788 UCACAGCCGGUCCAAUGACCGGUUUACAGCUCAUUGUGAGCCGGAUGCGGAUGUGGAU--GCAGCUACGGGCACGUUGGCAAAAUGGAGGG ......((..((((....(((((((((((....))))))))))).(((.((((((..(--(......))..)))))).)))...)))))). ( -32.80, z-score = -1.49, R) >consensus UCACUGCCGGUCCAAUGAGUCGU___CGGCUCAUUGUGAACCGGAUCCGGAUGUGGAU__ACAGCUACGGCCACGUUGACAAAA__G_G__ (((...((((((((((((((((....)))))))))).).)))))....((.(((((........))))).))....)))............ (-23.42 = -23.70 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:48 2011