| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,426,453 – 11,426,505 |
| Length | 52 |
| Max. P | 0.976523 |
| Location | 11,426,453 – 11,426,505 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 92.88 |
| Shannon entropy | 0.12403 |
| G+C content | 0.47504 |
| Mean single sequence MFE | -14.12 |
| Consensus MFE | -13.62 |
| Energy contribution | -13.62 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.95 |
| SVM RNA-class probability | 0.976523 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11426453 52 + 23011544 CAUUGAGAAACCGGGCAUGAAAGUCCGAUUAUUAAGGGCAAUGCCCACAGAA ............((((((....((((.........)))).))))))...... ( -15.40, z-score = -2.82, R) >droSim1.chr2L 11235666 52 + 22036055 CAUGGAGAAAGCGGGCAUGAAAGUUCGAUUAUUAAGGGCAAUGCCCACAGAA ..........(.((((((....((((.........)))).)))))).).... ( -12.90, z-score = -1.97, R) >droSec1.super_3 6821385 52 + 7220098 CAUGGAGAAACCGGGCAUGAAUGUUCGAUUAUUAAGGGCAAUGCCCACAAAA ...((.....))((((((...(((((.........)))))))))))...... ( -13.90, z-score = -1.84, R) >droYak2.chr2L 7826638 52 + 22324452 CAUUGAGAAACCGGGCGCGAAAGUCCGAUUAUUAAGGGCAAUGCCCACAGAA ..(((......(((((......)))))........((((...)))).))).. ( -14.40, z-score = -1.89, R) >droEre2.scaffold_4929 12628166 51 - 26641161 CAUGGAGAAACCGGGCACGAA-GUCCGAUUAUUAAGGGCAAUGCCCACAGAA ...((.....))(((((....-((((.........))))..)))))...... ( -14.00, z-score = -1.94, R) >consensus CAUGGAGAAACCGGGCAUGAAAGUCCGAUUAUUAAGGGCAAUGCCCACAGAA ............((((((....((((.........)))).))))))...... (-13.62 = -13.62 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:37 2011