| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,161,321 – 15,161,435 |
| Length | 114 |
| Max. P | 0.893863 |
| Location | 15,161,321 – 15,161,435 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 81.44 |
| Shannon entropy | 0.32626 |
| G+C content | 0.55798 |
| Mean single sequence MFE | -40.12 |
| Consensus MFE | -29.60 |
| Energy contribution | -30.68 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.893863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15161321 114 + 22422827 GCCUCCGCCACGACCAUGUACAAACAUAUGUAUGUGCGUCAGGGCUUUUCCACUGGGUCUCCGGGUUUUUCGGGCACGGAGCAGAUGUGUCCGGCGAAAGUGGGGCGGUAUUUC ....(((((..(((((((((((.((....)).)))))))(((((.....)).))))))).(((..(((.(((((((((.......))))))))).)))..))))))))...... ( -44.90, z-score = -1.87, R) >droSim1.chrX 11698912 114 + 17042790 ACCUCCGCCACGUUCAUGUACAUACAUAUGUAUGUGCGUCAGGGCUUUUCCACUGGGUCUCCGGGUUUUUCGGGCACGGAGCAGAUGUGUCCGGCGAAAGUGGGGCGGUAUUUC ....(((((..((((((((((((((....))))))))))..))))....(((((...((.((.((....))(((((((.......))))))))).)).))))))))))...... ( -45.30, z-score = -2.57, R) >droSec1.super_56 50901 114 + 192059 ACCUCCGAGACGUUCAUGUACAUACAUAUGUAUGUGCGUCAGGGCUUUUCCACUGGGUCUCCGGGUUUUUCGGGCACGGAGCAGAUGUGUCCGGCGAAAGUGGGGCGGUAUUUC (((.(((((((....((((((((((....))))))))))(((((.....)).))).)))))(.(.(((((((((((((.......))))))))).)))).).))).)))..... ( -42.70, z-score = -2.01, R) >droYak2.chrX 9361369 87 + 21770863 ---------------------------AUGUAUGUACGUCAGUGCCUUUUCACUGGGUCUCCGGGUUUUCCGGGCACGGACCAGAUGUGUCCGGCGAAAGUGGGGCGGUAUUUC ---------------------------......(((((((.((((((.....((((....)))).......)))))).)))......(((((.((....)).)))))))))... ( -31.60, z-score = -1.30, R) >droEre2.scaffold_4690 6891875 100 - 18748788 ------------ACCACGUCCAUG--UAUGUAUGUACAUCAGAGCUUCCUCACUGGGUCGCCGGGUUUUUCGGGCACGGAGCAGAUGUGUCCGGCGAAAGUGGGGCGGUAUUUC ------------.........(((--(((....))))))....(((.(((((((...(((((.((....))(((((((.......)))))))))))).))))))).)))..... ( -36.10, z-score = -1.33, R) >consensus _CCUCCG__ACGACCAUGUACAUACAUAUGUAUGUGCGUCAGGGCUUUUCCACUGGGUCUCCGGGUUUUUCGGGCACGGAGCAGAUGUGUCCGGCGAAAGUGGGGCGGUAUUUC .................((((((((....))))))))......(((.(((((((...((.((.((....))(((((((.......))))))))).)).))))))).)))..... (-29.60 = -30.68 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:46 2011