Locus 14737

Sequence ID dm3.chrX
Location 15,161,105 – 15,161,182
Length 77
Max. P 0.977590
window20284 window20285

overview

Window 4

Location 15,161,105 – 15,161,182
Length 77
Sequences 10
Columns 81
Reading direction forward
Mean pairwise identity 70.42
Shannon entropy 0.58451
G+C content 0.49094
Mean single sequence MFE -14.09
Consensus MFE -6.94
Energy contribution -7.14
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.49
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.98
SVM RNA-class probability 0.977590
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15161105 77 + 22422827
ACAUUUGCCACAAUUUGGCAAACAAAUCACGUAGC--AACUGACGCUGCUCAUCCCACUGCCCAUAUCCCAUAUCCCAU--
...(((((((.....)))))))........(((((--.......)))))..............................-- ( -13.70, z-score =  -2.48, R)
>droEre2.scaffold_4690 6891689 69 - 18748788
ACAUUUGCCACAAUUUGGCAAACAAAUCACGUAGC--AACUGACGCUGCUCAUCCCACUGCCCACACCCAU----------
...(((((((.....)))))))........(((((--.......)))))......................---------- ( -13.70, z-score =  -2.35, R)
>droYak2.chrX 9361137 69 + 21770863
ACAUUUGCCACAAUUUGGCAAACAAAUCACGUAGC--AACUGACGCUGCUCAUCCCACUGCCCACCACCAU----------
...(((((((.....)))))))........(((((--.......)))))......................---------- ( -13.70, z-score =  -2.35, R)
>droSec1.super_56 50713 59 + 192059
ACAUUUGCCACAAUUUGGCAAACAAAUCACGUAGC--AACUGACGCUGCUCAUCCCACUGC--------------------
...(((((((.....)))))))........(((((--.......)))))............-------------------- ( -13.70, z-score =  -2.33, R)
>droSim1.chrX 11698710 63 + 17042790
ACAUUUGCCACAAUUUGGCAAACAAAUCACGUAGC--AACUGACGCUGCUCAUCCCACUGCCCAU----------------
...(((((((.....)))))))........(((((--.......)))))................---------------- ( -13.70, z-score =  -2.26, R)
>dp4.chrXL_group1a 7508126 65 - 9151740
ACAUUUGCCACA-UUCGGCAAACAAAUCACGUAGC-AAAUGCCCAGUCCAUUCCUCGCCAGUGCCUC--------------
...((((((...-...))))))...........((-(...((...(......)...))...)))...-------------- (  -9.40, z-score =  -0.61, R)
>droPer1.super_53 110941 65 + 525408
ACAUUUGCCACA-UUCGGCAAACAAAUCACGUAGC-AAAUGCCCAGUCCAUUCCUCGCCAGUGCCUC--------------
...((((((...-...))))))...........((-(...((...(......)...))...)))...-------------- (  -9.40, z-score =  -0.61, R)
>droAna3.scaffold_13117 4411075 59 - 5790199
ACAUUUGCCACAAUUUGGCAAACAAAUCACGUAGC--AGCUGGCGGUGCUCAUUCCGAUUC--------------------
...(((((((.....)))))))........(.(((--(.(....).)))))..........-------------------- ( -12.60, z-score =  -0.52, R)
>droWil1.scaffold_180777 2241000 78 + 4753960
ACAUUUGCCACAAUUUGGCAAACAAAUCACGUAGG--AACUGGCGUUGCUU-CGCCGAUUCCCUUUACACUCACUUCCCAU
...(((((((.....)))))))........(((((--((.(((((......-))))).))))...)))............. ( -20.90, z-score =  -3.85, R)
>droMoj3.scaffold_6359 2010207 74 + 4525533
ACAUUUGCCACAAUUUGGCAAACAAAUCACGUAGCCGAGCUGCCGCUGCUCCACUCGCCUGCCCCAUUUGGCCA-------
...(((((((.....)))))))(((((...((((.((((..((....))....)))).))))...)))))....------- ( -20.10, z-score =  -1.53, R)
>consensus
ACAUUUGCCACAAUUUGGCAAACAAAUCACGUAGC__AACUGACGCUGCUCAUCCCACUGCCCAC________________
...(((((((.....)))))))........................................................... ( -6.94 =  -7.14 +   0.20)

alignment

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secondary structure

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dotplot

Postscript

Window 5

Location 15,161,105 – 15,161,182
Length 77
Sequences 10
Columns 81
Reading direction reverse
Mean pairwise identity 70.42
Shannon entropy 0.58451
G+C content 0.49094
Mean single sequence MFE -19.73
Consensus MFE -9.22
Energy contribution -9.06
Covariance contribution -0.16
Combinations/Pair 1.12
Mean z-score -1.01
Structure conservation index 0.47
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.05
SVM RNA-class probability 0.519992
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15161105 77 - 22422827
--AUGGGAUAUGGGAUAUGGGCAGUGGGAUGAGCAGCGUCAGUU--GCUACGUGAUUUGUUUGCCAAAUUGUGGCAAAUGU
--..........................(((((((((....)))--))).))).....((((((((.....)))))))).. ( -18.50, z-score =  -0.13, R)
>droEre2.scaffold_4690 6891689 69 + 18748788
----------AUGGGUGUGGGCAGUGGGAUGAGCAGCGUCAGUU--GCUACGUGAUUUGUUUGCCAAAUUGUGGCAAAUGU
----------.(.(.((....)).).).(((((((((....)))--))).))).....((((((((.....)))))))).. ( -18.60, z-score =  -0.29, R)
>droYak2.chrX 9361137 69 - 21770863
----------AUGGUGGUGGGCAGUGGGAUGAGCAGCGUCAGUU--GCUACGUGAUUUGUUUGCCAAAUUGUGGCAAAUGU
----------....(((..(((((....(((((((((....)))--))).)))...)))))..)))............... ( -20.80, z-score =  -1.16, R)
>droSec1.super_56 50713 59 - 192059
--------------------GCAGUGGGAUGAGCAGCGUCAGUU--GCUACGUGAUUUGUUUGCCAAAUUGUGGCAAAUGU
--------------------........(((((((((....)))--))).))).....((((((((.....)))))))).. ( -18.50, z-score =  -1.37, R)
>droSim1.chrX 11698710 63 - 17042790
----------------AUGGGCAGUGGGAUGAGCAGCGUCAGUU--GCUACGUGAUUUGUUUGCCAAAUUGUGGCAAAUGU
----------------............(((((((((....)))--))).))).....((((((((.....)))))))).. ( -18.50, z-score =  -0.93, R)
>dp4.chrXL_group1a 7508126 65 + 9151740
--------------GAGGCACUGGCGAGGAAUGGACUGGGCAUUU-GCUACGUGAUUUGUUUGCCGAA-UGUGGCAAAUGU
--------------......(..((.(....).).)..)((((((-(((((((..............)-)))))))))))) ( -17.64, z-score =  -0.94, R)
>droPer1.super_53 110941 65 - 525408
--------------GAGGCACUGGCGAGGAAUGGACUGGGCAUUU-GCUACGUGAUUUGUUUGCCGAA-UGUGGCAAAUGU
--------------......(..((.(....).).)..)((((((-(((((((..............)-)))))))))))) ( -17.64, z-score =  -0.94, R)
>droAna3.scaffold_13117 4411075 59 + 5790199
--------------------GAAUCGGAAUGAGCACCGCCAGCU--GCUACGUGAUUUGUUUGCCAAAUUGUGGCAAAUGU
--------------------((((((.....((((.(....).)--)))...))))))((((((((.....)))))))).. ( -16.00, z-score =  -0.98, R)
>droWil1.scaffold_180777 2241000 78 - 4753960
AUGGGAAGUGAGUGUAAAGGGAAUCGGCG-AAGCAACGCCAGUU--CCUACGUGAUUUGUUUGCCAAAUUGUGGCAAAUGU
.....((((.(.(((...((((((.((((-......)))).)))--))))))).))))((((((((.....)))))))).. ( -23.90, z-score =  -2.06, R)
>droMoj3.scaffold_6359 2010207 74 - 4525533
-------UGGCCAAAUGGGGCAGGCGAGUGGAGCAGCGGCAGCUCGGCUACGUGAUUUGUUUGCCAAAUUGUGGCAAAUGU
-------..(((((((..(((((((((((.(((((((....)))..)))...).)))))))))))..))).))))...... ( -27.20, z-score =  -1.28, R)
>consensus
________________GUGGGCAGCGGGAUGAGCAGCGUCAGUU__GCUACGUGAUUUGUUUGCCAAAUUGUGGCAAAUGU
..........................................................((((((((.....)))))))).. ( -9.22 =  -9.06 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:45 2011