| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,125,589 – 15,125,748 |
| Length | 159 |
| Max. P | 0.941002 |
| Location | 15,125,589 – 15,125,748 |
|---|---|
| Length | 159 |
| Sequences | 3 |
| Columns | 174 |
| Reading direction | reverse |
| Mean pairwise identity | 66.86 |
| Shannon entropy | 0.45763 |
| G+C content | 0.34661 |
| Mean single sequence MFE | -39.33 |
| Consensus MFE | -18.93 |
| Energy contribution | -20.60 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.941002 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15125589 159 - 22422827 UUAAGCCAAAAAAAAAAAAAAAAA---AAUGUUGAUAGAAGCGAGGUCCUGCCUUUAAAAUAUCUGCAGUUGUUGGGGAUUAUUUUUAUGUAGGCCACGAAUUACAACAGCAUUUUUGGCACUAUUUUCGCAGGAUUUGUGCAGCUGU-UGAACUUCAUAUUC----------- ........................---....(..((((..((((((((((((...(((((.((((.(((...))).))))...))))).((((((((.((((.........)))).)))).))))....))))))))).)))..))))-..)...........----------- ( -35.00, z-score = -0.38, R) >droSec1.super_56 14552 170 - 192059 UUAUGCC-AAAAAAAAGAAAAUAA---ACCGAUGAAAACAGCGAGGUCCUGCCUUAAAAAUAUCUGCAAUUGUUGUUGAUUAUUUUUAAGUAGGCCACGAAUUACAACAGCAUUUUUGGCACUACUUUCGCAGGAUUUAUGCAGAAAUAUAAAAUGCAGGUUGUUCAACUCUUA .......-........(((....(---(((.............(((((((((.(((((((((((.(((.....))).)).)))))))))((((((((.((((.........)))).)))).))))....))))))))).((((...........)))))))).)))........ ( -39.10, z-score = -1.77, R) >droYak2.chrX 9325567 145 - 21770863 CUAAGCUGAAAAAAAAAAAAAAAAAUGAAGGAUGAAAACAGCGAGGUCCUGGCUUAAAAAUAUCCGCAAUUGCUGGGGAUUAUUUUUAAGUAGGCCUCG-AUUACAACAGUAGUUGUUGUAUCGCACCUAUGUGAACUUUCAAUUC---------------------------- .........................((((((......(((((((((.((((.(((((((((((((.((.....)).))).))))))))))))))))))(-(((((....))))))))))).(((((....))))).))))))....---------------------------- ( -43.90, z-score = -4.75, R) >consensus UUAAGCC_AAAAAAAAAAAAAAAA___AACGAUGAAAACAGCGAGGUCCUGCCUUAAAAAUAUCUGCAAUUGUUGGGGAUUAUUUUUAAGUAGGCCACGAAUUACAACAGCAUUUUUGGCACUACUUUCGCAGGAUUUAUGCAGAA_U_U_AA_U_CA__UU____________ ....((((((((....................(....)...((.((.((((.(((((((((((((.((.....)).))).)))))))))))))))).)).............))))))))...................................................... (-18.93 = -20.60 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:36 2011