| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,426,048 – 11,426,170 |
| Length | 122 |
| Max. P | 0.940479 |
| Location | 11,426,048 – 11,426,170 |
|---|---|
| Length | 122 |
| Sequences | 6 |
| Columns | 141 |
| Reading direction | forward |
| Mean pairwise identity | 74.18 |
| Shannon entropy | 0.50731 |
| G+C content | 0.36620 |
| Mean single sequence MFE | -30.72 |
| Consensus MFE | -16.88 |
| Energy contribution | -17.22 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.940479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11426048 122 + 23011544 CUGAAGUAUUG-GCCAACUGACUAAGUUGGCUGGCCAGAUUAAAUGGCAAACAAAUUUUAGCUGUGAUUAAAGUUGAAGAUAUGAAGC------------------UAUGAAUACAAUAGAUUUGAUUUAUAAAUGGAUAU ((...((((((-(((((((.....)))))))).((((.......))))........(((((((........))))))))))))..)).------------------(((((((.(((.....))))))))))......... ( -28.50, z-score = -2.79, R) >droSim1.chr2L 11235230 140 + 22036055 CUGAAGUAUUG-GCCAACUGACUAAGUUGGCUGGCCAGAUUAAAUGGCAAACAAAUUUUAGCUGCGAUUAAAGUUCAAGAUAUGAAGCAGAAAAGGUGGACUAGCUUAUGAAUACAAAAGAUUUGAUAUACAAAUUGAUAU .....((((.(-(((((((.....)))))))).((((.......))))...((((((((..((((.....................))))...((((......))))..........))))))))..)))).......... ( -29.50, z-score = -1.31, R) >droSec1.super_3 6820953 140 + 7220098 CUGAAGUAUUG-GCCAACUGACUAAGUUGGCUGGCCAGAUUAAAUGGCAAACAAAUUUUAGCUGCGAUUAAAGUUCAAGAUAUGAAGCAGAAAAGGUGGACUAGCUUAUGAAUACAAAAGAUUUGAUAUUCAAAUGGUUAU (((((((.(((-(((((((.....)))))))..((((.......))))...))))))))))((((.....................))))...........(((((..(((((((((.....))).))))))...))))). ( -33.10, z-score = -1.82, R) >droYak2.chr2L 7825614 135 + 22324452 -----GGGAUG-GCCAACUGACUAAGUUGGCUGGCCAGAUUAAAUGGCAAACAAAUUUUGGCUGCGAUUUAAGCUCGAGAUAUGAGGCAGAAAAGGCGAACUAGCUUAUGAAUACAAAAUAUAUGAUAUAUAAUCGGAUAU -----.((..(-(((((((.....))))))))..)).(((((.(((((...((.(((((((((........))).)))))).))..)).....((((......))))...................))).)))))...... ( -34.10, z-score = -2.53, R) >droEre2.scaffold_4929 12627768 124 - 26641161 GGGAAGUAUUG-GCCAACUGACUGAGUUGGCUGGCCAGAUUAAAUGGCAAACAAAUUUUAGCUGCGAUUAAAGUUCGAGAUAUGCAGCAGGAAAGGCGG-UUUGCUUAUGA-UAUAAAAACGGGGAU-------------- ........(((-((((.(..((...))..).)))))))((((...(((((((...((((.(((((((((.........))).))))))...))))...)-))))))..)))-)..............-------------- ( -32.90, z-score = -1.72, R) >droAna3.scaffold_12916 12132461 129 - 16180835 UGGAAGCUCUGAGCCAACUGACUAACUUGGCUUGUUAGAUAAAACGGCAAACAAAUUUGUGGUGCGAUCCAGGUUUAAGAUAAAUGGGGAAA-----------GCUUAUGAAUAGAAAAGAUGCUCUCUAAAAAAUCAUU- (((((((((((((((((.(.....).))))))).....((((.((.(((((....))))).))((..(((..(((((...)))))..)))..-----------)))))).........))).))).))))..........- ( -26.20, z-score = -0.31, R) >consensus CUGAAGUAUUG_GCCAACUGACUAAGUUGGCUGGCCAGAUUAAAUGGCAAACAAAUUUUAGCUGCGAUUAAAGUUCAAGAUAUGAAGCAGAAAAGG_GG_CUAGCUUAUGAAUACAAAAGAUUUGAUAUACAAAUGGAUAU ............(((((((.....)))))))..((((.......))))...((.(((((((((........)))).))))).))......................................................... (-16.88 = -17.22 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:36 2011