| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,112,265 – 15,112,367 |
| Length | 102 |
| Max. P | 0.938686 |
| Location | 15,112,265 – 15,112,367 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 85.71 |
| Shannon entropy | 0.23260 |
| G+C content | 0.38131 |
| Mean single sequence MFE | -24.73 |
| Consensus MFE | -17.83 |
| Energy contribution | -18.20 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.938686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15112265 102 - 22422827 AAUAGAAAACCGAAAGCCUCUCAUUUGGCACAUUUGUGGUGUGUGCUUUAUAUACCCCACAUAAAUAUGUAUGCUACCCUAUACCCUACCCUAUAUAUAUAU .((((..........(((........)))((((.(((((.(((((.....))))).))))).....))))........)))).................... ( -18.00, z-score = -1.22, R) >droSim1.chrX 11648336 101 - 17042790 AAUAGAAAACUGAAAGCCUCUCAUUUGGCACAUUUGUGGUGUGUGCCUUAUAUACCCCACAUAAAUAUGUAUGCGCAAGCAUACACUACCCUAUAUAUAAA- .((((..........(((........))).....(((((.(((((.....))))).)))))......(((((((....))))))).....)))).......- ( -28.10, z-score = -3.83, R) >droSec1.super_32 558770 101 - 562834 AAUAGAAAACCGAAAGCCUCUCAUUUGGCUCGUUUGUGGUGUGUGCCUUAUAUACCCCACAUAAAUAUGUAUGCGCAAGCAUACACUACCCUAUAUAUAAA- .((((.....(((..(((........))))))..(((((.(((((.....))))).)))))......(((((((....))))))).....)))).......- ( -28.60, z-score = -4.20, R) >droEre2.scaffold_4690 6846879 100 + 18748788 AAUAGAAAACCGAAAGCCUCUCAUUCGGCACAUUUGCGGUCUGUGCUUUAUAUA-CCCACGUAAAUAUGUACGAGUAUGUGUGGGGUACCCACUAUAUAUA- .((((...((((((((((........)))...))).))))..((((((((((((-..(.((((......)))).)..))))))))))))...)))).....- ( -24.20, z-score = -0.73, R) >consensus AAUAGAAAACCGAAAGCCUCUCAUUUGGCACAUUUGUGGUGUGUGCCUUAUAUACCCCACAUAAAUAUGUAUGCGCAAGCAUACACUACCCUAUAUAUAAA_ ...............(((........))).....(((((.(((((.....))))).)))))......(((((((....)))))))................. (-17.83 = -18.20 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:35 2011