| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,107,717 – 15,107,814 |
| Length | 97 |
| Max. P | 0.724781 |
| Location | 15,107,717 – 15,107,814 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 81.48 |
| Shannon entropy | 0.34872 |
| G+C content | 0.53515 |
| Mean single sequence MFE | -31.02 |
| Consensus MFE | -19.28 |
| Energy contribution | -20.84 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724781 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15107717 97 - 22422827 UGGAGCUGGC-AAAGGAGAUAAAGAUGUGGAUAUAGAUGGACUAGGCCAUCG---UGCUGCGACAUCGGU---GACCGAGCAGCGGCGAAAGUAGCCGCAAGGA ....(((.(.-............(((((.(.....(((((......))))).---.....).)))))(..---..)).))).(((((.......)))))..... ( -30.70, z-score = -1.69, R) >droSim1.chrX 11621259 97 - 17042790 UGGAGCUGGC-AAAGGAGAUAAAGAUGUGGAUAUAGAUGGACUAGGCCAUCG---UCCUGCGACAUCGGU---GACCGAGCAGCGGCGAAAGUAGCCGCAAGGA ....(((.(.-............(((((.(.....(((((......))))).---.....).)))))(..---..)).))).(((((.......)))))..... ( -30.70, z-score = -1.44, R) >droSec1.super_32 554312 97 - 562834 UGGAGCUGGC-AAAGGAGAUAAAGAUGUGGAUAUAGAUGGACUAGGCCAUCG---UCCUGCGACAUCGGU---GACCGAGCAGCGGCGAAAGUAGCCGCAAGGA ....(((.(.-............(((((.(.....(((((......))))).---.....).)))))(..---..)).))).(((((.......)))))..... ( -30.70, z-score = -1.44, R) >droYak2.chrX 9309403 98 - 21770863 CGAAGCUGGCUAGAGGAGAUAAAGAUGUGGAUAUAGAUGGACUAGGCCAUCU---UGCUGCGACAUCGGU---GACCGAGCAGCGGCGAAAGUAGCCGCAAGUA ....(((.(((...((..((...(((((.(....((((((......))))))---.....).))))).))---..)).))).(((((.......))))).))). ( -33.60, z-score = -2.35, R) >droEre2.scaffold_4690 6842608 97 + 18748788 UGGUGCUUGC-CAAGCAGAUAAAGAUGUGGAUAUAGAUGGACUUGGCCAUCU---GGCUGCGACAUCGGU---GACCGAGCAGCGGCGAAAGUAGCCGCAAGCA ...(((((((-...((.......(((((.(...(((((((......))))))---)....).)))))(..---..)...)).((.((....)).)).))))))) ( -36.50, z-score = -1.97, R) >droWil1.scaffold_180777 2450753 95 + 4753960 ------UGU--GGCGUAGAU-GAGAUGUUGGCAGAGACACAGUGAGCCAGUGAGACAGUGAGACAUUGGUGUAGAAGUAGCAACAGCGAAAGUAGCCGCAAGUA ------(((--(((......-....(((((((....((((((((...((.((...)).))...)))).))))....))..)))))((....)).)))))).... ( -23.90, z-score = -1.95, R) >consensus UGGAGCUGGC_AAAGGAGAUAAAGAUGUGGAUAUAGAUGGACUAGGCCAUCG___UGCUGCGACAUCGGU___GACCGAGCAGCGGCGAAAGUAGCCGCAAGGA ....(((................(((((.(.....(((((......))))).........).)))))(((....))).))).(((((.......)))))..... (-19.28 = -20.84 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:34 2011