| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,091,953 – 15,092,059 |
| Length | 106 |
| Max. P | 0.500000 |
| Location | 15,091,953 – 15,092,059 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.91 |
| Shannon entropy | 0.54993 |
| G+C content | 0.39609 |
| Mean single sequence MFE | -18.77 |
| Consensus MFE | -8.55 |
| Energy contribution | -10.08 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 15091953 106 + 22422827 CACUAAGCACUCUCCACCGAUUUUCAUUU--------------AACAUUUUGCAUUUUCCAUAUAUUGUCCAGGGCGCAUUUAUCGUGUCAAGUGGUUUGUCGCAUAUCGUUUGUUUAGU .((((((((..(.....((((..((((((--------------.((((..(((....(((............))).)))......)))).))))))...))))......)..)))))))) ( -18.10, z-score = -0.80, R) >dp4.chrXL_group1a 7368090 87 - 9151740 CUAUAAACAAUGACCUACAUUGUUCAAAAAC------------AUCAUUCAGCUACUGAAAUGGAG-ACUUGAAGCAUAUUUG-CAUAAUUCCCGCUCUAU------------------- .....(((((((.....))))))).......------------....(((((...)))))((((((-....((((((....))-)....)))...))))))------------------- ( -14.20, z-score = -1.63, R) >droSim1.chrX 11639372 106 + 17042790 CACUAAGCACUCUCCACCGAUUUUCAUUUU--------------UCAUUUCGCAUUUUCCAUCGAUUGUCCAGGGCGCAUUUAUCGUGUCAAGUGGUUUGUCGCAUAUUGUUUGUUUAGU .((((((((..(.....(((..........--------------.....)))..........((((...(((.(((((.......)))))...)))...))))......)..)))))))) ( -18.96, z-score = -1.01, R) >droSec1.super_32 538108 106 + 562834 CACUAAGCACUCUCCACCGAUUUUCAUUUU--------------UCAUUUCGCAUUUUCCAUCGAUUGUCCAGGGCGCAUUUAUCGUGUCAAGUGGUUUGUCGCAUAUUGUUUGUUUAGU .((((((((..(.....(((..........--------------.....)))..........((((...(((.(((((.......)))))...)))...))))......)..)))))))) ( -18.96, z-score = -1.01, R) >droYak2.chrX 9281767 120 + 21770863 CACUAAGCACUCUCCACCGAUUUUCAUUUUCCAUUUACCAUUUACCAUUUUCCAUUUUCCGUCGAUUGUCCAGGGCGCAUUUAUCGUGUCAAGUGGUUUGUCGCAUAUUGUUUGUUUAGU .((((((((..(......(.....)...................................(.((((...(((.(((((.......)))))...)))...))))).....)..)))))))) ( -18.90, z-score = -0.94, R) >droEre2.scaffold_4690 6827423 113 - 18748788 CACUAAGCACUCUCCACCGAUUUUCAUUUUCCAUUUU-------CCGCUUUCCACUUUCCAUCGAUUGUCCAGGGCGCGUUAAUCGUGUCAAGUGGUUUGUUGCAUAUUGUUUGCUUAGU .((((((((..(......(.....)............-------..((...((((((..((.((((((............))))))))..))))))......)).....)..)))))))) ( -23.50, z-score = -1.79, R) >consensus CACUAAGCACUCUCCACCGAUUUUCAUUUU______________UCAUUUUGCAUUUUCCAUCGAUUGUCCAGGGCGCAUUUAUCGUGUCAAGUGGUUUGUCGCAUAUUGUUUGUUUAGU .((((((((.........(.....).....................................((((...(((.(((((.......)))))...)))...)))).........)))))))) ( -8.55 = -10.08 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:31 2011