| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,080,933 – 15,081,024 |
| Length | 91 |
| Max. P | 0.952643 |
| Location | 15,080,933 – 15,081,024 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 69.56 |
| Shannon entropy | 0.51514 |
| G+C content | 0.51836 |
| Mean single sequence MFE | -29.45 |
| Consensus MFE | -16.64 |
| Energy contribution | -17.92 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.952643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15080933 91 - 22422827 CCGGAGUGGUUUUCACCUCAUAAUCAGGUGGAGUAGCUACCUCUUUCUGGAGAGGUUUGGCUACCUCCUUUUCCGAAAUAAUCUCUUUUAC--------- .(((((.((..(((((((.......)))))))(((((((((((((....)))))))..))))))..))..)))))................--------- ( -31.40, z-score = -3.06, R) >droSim1.chrX 11628770 91 - 17042790 UCGGAGUGGCCUUCACCUCAUAUUCAGGUGGAGUAUCUACCUCUUUCUGGGGAGGAUUGGCUACCUCCUUUUCCGAAAUAACCUCUUUCAC--------- ..(((((((((.((.(((((.....((((((.....)))))).....)))))..))..))))).))))......((((.......))))..--------- ( -29.70, z-score = -1.99, R) >droSec1.super_32 527228 91 - 562834 UCGGAGUGGCCUUCACCUCAUAUUCAGGUGGAGUAUCUACCUCUUUCUGGGGAGGAUUGGCUACCUCCUUUUCCGAAAUAACCUCUUUCAC--------- ..(((((((((.((.(((((.....((((((.....)))))).....)))))..))..))))).))))......((((.......))))..--------- ( -29.70, z-score = -1.99, R) >droEre2.scaffold_4690 6816734 91 + 18748788 UGGGAGAGGUCUUGCCCUCAUGUUCAGGUAGGGUAUCUACCUCUUUCUGGGCAGGAUUGGCCAACUCCUUUUCUGAAAGAACCUCUUUCAU--------- ((..(((((((((((((........((((((.....))))))......))))((((..((......))..))))..))).))))))..)).--------- ( -33.44, z-score = -1.82, R) >droVir3.scaffold_10324 231382 97 + 1288806 CAUGAGCCGCCGCCUCCUCCUGUGCA---CUAGCAGCCGCCUCCUCUUCUGCAUGAGCCGCCGCCUCCUCCUGUGCAUGAGCCGCCGCCUCCUCCUGUGC ((.(((..((.((...(((.((..((---..((..((.((...(((........)))..)).))...))..))..)).)))..)).))...))).))... ( -23.00, z-score = 0.34, R) >consensus UCGGAGUGGCCUUCACCUCAUAUUCAGGUGGAGUAUCUACCUCUUUCUGGGGAGGAUUGGCUACCUCCUUUUCCGAAAUAACCUCUUUCAC_________ ..(((((((((....((((...((((((.((((.......)))).))))))))))...))))).))))................................ (-16.64 = -17.92 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:30 2011