| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,078,305 – 15,078,402 |
| Length | 97 |
| Max. P | 0.679311 |
| Location | 15,078,305 – 15,078,402 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 75.33 |
| Shannon entropy | 0.49154 |
| G+C content | 0.45789 |
| Mean single sequence MFE | -24.05 |
| Consensus MFE | -11.84 |
| Energy contribution | -13.28 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.679311 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15078305 97 - 22422827 GCUCUCAAUUUCAGCGGGAACGCAAUAAAAUUUCCCGCGGAAAUUUCCGCCAUUGUUUAAUUUUCUCAAGAGCCCGAGAGCGCAACUUCAGCAGACG ((((((((((((.(((((((...........))))))).))))))...((..(((...........)))..))..))))))((.......))..... ( -29.20, z-score = -3.04, R) >droAna3.scaffold_13248 3082030 90 - 4840945 CUUCUCCUAUUUGAAGAAUUCUUCUUAGACUUCCAUGCACAGUUCUACGC-----UUUAUUCUUCUAGAAGAAGCACUAGUGU--CUUCCAUGAAGG ((((..(((...((((....)))).)))........(((((((.....((-----(((.(((.....))))))))))).))))--.......)))). ( -16.60, z-score = -0.34, R) >droEre2.scaffold_4690 6814036 91 + 18748788 GCCCUCAAUUGCAG------CGCAAUAAAAUUUCCCGCGGAAAUUUCCAGCAUUGUUUAAUUUUCUCGAGACCCCGAAUGCGCAACUUCAGCAGAAG ((........)).(------((((...((((((((...))))))))...................(((......))).)))))..((((....)))) ( -17.20, z-score = -0.58, R) >droYak2.chrX 9268678 97 - 21770863 GCUCUCAAUUUCAAGCGGAACGCAAUAAAAUUUCCCGCGGAAAUUUUCGCCUUUGUUUAAUUUUCUCGAGAGCCCGAGAGCGCAACUUCAGCAGACG ((((((..((((..((((................))))(((((((...((....))..)))))))..))))....))))))((.......))..... ( -22.49, z-score = -0.40, R) >droSec1.super_32 524586 97 - 562834 GCUCUCAAUUUCAGCGGGAACGCAAUAAAAUUUCUCGCGGAAAUUUCCGCCAUUGUUUAAUUUUCUCGAGAGCCCGAGAGCGCAACUUCAGCAGACG ((((((.......(((....)))........((((((.(((((((...((....))..))))))).))))))...))))))((.......))..... ( -29.90, z-score = -2.53, R) >droSim1.chrX 11626166 97 - 17042790 GCUCUCAAUUUCAGCGGGAACGCAAUAAAAUUUCCCGCGGAAAUUUCCGCCAUUGUUUAAUUUUCUCGAGAGCCCGAGAGCGCAACUUCAGCAGACG ((((((((((((.(((((((...........))))))).))))))...((..(((...........)))..))..))))))((.......))..... ( -28.90, z-score = -2.36, R) >consensus GCUCUCAAUUUCAGCGGGAACGCAAUAAAAUUUCCCGCGGAAAUUUCCGCCAUUGUUUAAUUUUCUCGAGAGCCCGAGAGCGCAACUUCAGCAGACG ((((((.......(((....))).............(((((....))))).........................))))))((.......))..... (-11.84 = -13.28 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:29 2011