Locus 14722

Sequence ID dm3.chrX
Location 15,074,339 – 15,074,442
Length 103
Max. P 0.665016
window20265

overview

Window 5

Location 15,074,339 – 15,074,442
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 79.20
Shannon entropy 0.35600
G+C content 0.65373
Mean single sequence MFE -35.20
Consensus MFE -19.58
Energy contribution -21.62
Covariance contribution 2.04
Combinations/Pair 1.13
Mean z-score -1.93
Structure conservation index 0.56
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.37
SVM RNA-class probability 0.665016
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15074339 103 + 22422827
GACGAGCUAUUCAUGGCCGAUCUAAAGGACGGCGGUGGUGGUGCAGUGCCACGCCCGCCGCCUCCACCACCGCCACCACCACCGCGAAAGCCCAACAUCGAUC
((((.((((....)))))).))....((..(((((((((((.((.(((.......))).))..))))))))))).........((....)))).......... ( -41.30, z-score =  -3.02, R)
>droSim1.chrX 11611166 103 + 17042790
GACGAGCUUUUCAUGGCCAAUUUGAAGCAUGGCGGUGGUGGUGCAGUGCCACGCCCGCCGCAUCCACCACCGCCCACACCACCGCGAAAGCCCAGCAUCGAUC
...(.(((......))))...((((.((..((((((((((((((.(((.......))).))).))))))))))).........((....))...)).)))).. ( -42.10, z-score =  -3.18, R)
>droEre2.scaffold_4690 6810194 103 - 18748788
GACGAGCUGUUCAUGGCCGACCUGAAGGACGGCGGCGGUGGUGCAGUGCCACGCCCGCCGCCUCCACCUCCGCCACCACCACCGCGCAAGCCCAGCAUCGAUC
..(((((((....((((.((..((.(((.((((((.((((((.....))))).)))))))))).))..)).))))........((....)).)))).)))... ( -46.60, z-score =  -2.79, R)
>dp4.chrXL_group1a 7344756 97 - 9151740
GAUGAGCUCUUUAUGGCAGACCUCAAAGAAGGUGAAGGCG------UGCCACGACCACCACCUCCGCCCCCCCCACCGCCCCCACGGAAGCCCAGCAUCGAUC
((((.(((......(((.(....)...(.(((((..((((------.....)).))..))))).)))).......(((......))).)))....)))).... ( -23.20, z-score =  -0.54, R)
>droPer1.super_28 863029 97 - 1111753
GAUGAGCUCUUUAUGGCAGACCUCAAAGAAGGUGAAGGCG------UGCCUCGACCACCACCUCCGCCCCCCCCACCGCCCCCACGGAAGCCCAGCAUCGAUC
((((.(((......(((.(....)...(.(((((..((((------.....)).))..))))).)))).......(((......))).)))....)))).... ( -22.80, z-score =  -0.14, R)
>consensus
GACGAGCUCUUCAUGGCCGACCUCAAGGAAGGCGGAGGUGGUGCAGUGCCACGCCCGCCGCCUCCACCACCGCCACCACCACCGCGAAAGCCCAGCAUCGAUC
..((((((......................(((((.(((((.((.(((.......))).))..))))).))))).........((....))..))).)))... (-19.58 = -21.62 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:28 2011