| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,027,087 – 15,027,180 |
| Length | 93 |
| Max. P | 0.500000 |
| Location | 15,027,087 – 15,027,180 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 82.93 |
| Shannon entropy | 0.27053 |
| G+C content | 0.28364 |
| Mean single sequence MFE | -10.37 |
| Consensus MFE | -6.71 |
| Energy contribution | -7.53 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 15027087 93 - 22422827 UUUGCAUUUUAGCUUCCAGUUCUGUUCUGUUAAAAAUAGGUUUUAUCCAUUUAAAUGCAAAUUAAAUUUCUCCCGUUUCUCAAUGUUUUUUCU (((((((((...........((((((........))))))............)))))))))................................ ( -10.00, z-score = -1.47, R) >droEre2.scaffold_4690 6762423 77 + 18748788 UUAGCAUUUUACCUUCCCGUUGUUGUC--UUAAAAAUGGGUUUCAUCCAUUUAAAUGCAAAUUAAAUUUCUCCUGUUUC-------------- ...((((((......((((((......--.....))))))............)))))).....................-------------- ( -9.97, z-score = -1.58, R) >droSec1.super_32 473871 86 - 562834 UUUGCAUUUUAGCUUUAAGUUCUGUUC--UUAAAAAUAGGUUCUAUCCAUUUAAAUGCAAAUUAAAUUUCUCCCGUUUCCUAAUGUUU----- (((((((((....((((((.......)--)))))....((......))....)))))))))...........................----- ( -11.00, z-score = -2.03, R) >droSim1.chrX_random 3909956 87 - 5698898 UUUGCAUUUUAGCUUCCAGUUCUGUUC--UUAAAAAUAGGUUCUAUCCAUUUAAAUGCAAAUUAAAUUUCUCCCGUUUCCUAAUUUUUU---- (((((((((........((.((((((.--.....))))))..))........)))))))))............................---- ( -10.49, z-score = -2.26, R) >consensus UUUGCAUUUUAGCUUCCAGUUCUGUUC__UUAAAAAUAGGUUCUAUCCAUUUAAAUGCAAAUUAAAUUUCUCCCGUUUCCUAAUGUUU_____ (((((((((...........((((((........))))))............)))))))))................................ ( -6.71 = -7.53 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:25 2011