| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,022,995 – 15,023,115 |
| Length | 120 |
| Max. P | 0.745625 |
| Location | 15,022,995 – 15,023,115 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.79 |
| Shannon entropy | 0.29406 |
| G+C content | 0.52969 |
| Mean single sequence MFE | -42.20 |
| Consensus MFE | -29.42 |
| Energy contribution | -30.22 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.745625 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15022995 120 + 22422827 CGCAGCGUUUGCGCAGGAUUGCGCGAAUUUGUUGGGCAGGAAUAUUGGCCAAUAUUCGCGAGUCCAGCUGCCAUUUAGUUGUGUUUGGCUCUUGGCAUUCGGCCGAUACAGUGCUGCUGC .((((((...((((.(((((.(((((((..(((((.(((.....))).)))))))))))))))))....((((..((....))..))))..(((((.....)))))....)))))))))) ( -48.40, z-score = -1.86, R) >droSim1.chrX_random 3933568 108 + 5698898 -----------CGCAGGAUUGCGCGAAUUCGUUGGGCAGGAAUAUUGGCCAAUAUUAGCGAGUCCAGCUGCCAUUUAGUUGAGUU-GGCUCUUGGCAUUCGGCCGAUACAGUAGUGCUGC -----------.((((.(((((((.(((..(((((.(((.....))).)))))))).))(((.((((((..((......))))))-)))))(((((.....)))))....))))).)))) ( -37.70, z-score = -1.23, R) >droSec1.super_32 469849 105 + 562834 -----------CGCAGGAUUGCGCGAAUUCGUUGGACAGGAAUAUUGGCCAAUAUUAGCGAGUCCAGCUGCCAUUUAGUUGAGUU-GGCUCUUGGCAUUCGCCCGAUACAGUGCUGC--- -----------.((((.((((..((.....(((((.(((.....))).)))))....((((((((((..((((...........)-)))..)))).)))))).))...)))).))))--- ( -35.00, z-score = -1.13, R) >droYak2.chrX 9213343 102 + 21770863 CGCAGCGUUUGCGCAGGAUUGCGCGAAUUUGUUGGGCAGGAAUAUUGGCCAAUAUACGCGAGUCCAGCUGCCAUUCAGUUGAGUU-GGCUCUUGGCAUUCGGC----------------- .((.((((((((((......))))))...((((((.(((.....))).)))))).))))((((((((..(((((((....))).)-)))..)))).)))).))----------------- ( -39.50, z-score = -1.78, R) >droEre2.scaffold_4690 6758450 116 - 18748788 CGCGGCGUUUGCGCAGGAUUGCGCGAAUUUGUUGGCCUGGAAUAUUGGCCAAUAUUCGCGAGUCCAGCUGCCAUUUAGUGGAGUU-GGCUCUUGGCAUUCAGCCGAUACAGAGCUGC--- .(((((((((((((......)))))))).((((((((.........)))))))).((..(((.((((((.((((...))))))))-)))))(((((.....)))))....)))))))--- ( -50.40, z-score = -3.03, R) >consensus CGC_GCGUUUGCGCAGGAUUGCGCGAAUUUGUUGGGCAGGAAUAUUGGCCAAUAUUCGCGAGUCCAGCUGCCAUUUAGUUGAGUU_GGCUCUUGGCAUUCGGCCGAUACAGUGCUGC___ ............((.(((((.(((((((..(((((.(((.....))).))))))))))))))))).))(((((...(((........)))..)))))....................... (-29.42 = -30.22 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:22 2011