| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,990,339 – 14,990,433 |
| Length | 94 |
| Max. P | 0.997792 |
| Location | 14,990,339 – 14,990,433 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 72.57 |
| Shannon entropy | 0.51460 |
| G+C content | 0.39544 |
| Mean single sequence MFE | -25.17 |
| Consensus MFE | -20.36 |
| Energy contribution | -19.62 |
| Covariance contribution | -0.74 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.18 |
| SVM RNA-class probability | 0.997792 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14990339 94 + 22422827 UUCCAUGUCUAUUUACCCGAUGUUACCUGAAAAUGUAUCUGCUUCUGGGGAGU---AUUUAAUCAAAAAGGCAAUUACUCAGA-GCAGAUGCAUGUGA ................................(((((((((((.(((((..((---.(((......))).)).....))))))-)))))))))).... ( -21.90, z-score = -1.00, R) >droSim1.chrX 11567150 94 + 17042790 UUCCAUGUCUAUUUACCCGAUGUUUCCCGAAAAUGUAUCUGCUUCUGGGAAGA---AUUUAACCAAAAGUUGCAUUACUUAGA-GCAGAUGCAUCUGA ................................(((((((((((.(((((...(---((.((((.....)))).))).))))))-)))))))))).... ( -21.60, z-score = -2.00, R) >droSec1.super_32 436964 93 + 562834 UUCCAUGUCUAUUUACCCGAUGUUUCCUGAAAAUGUAUCUGCAUCUGGGAAGA---AUUUAAUCAAAAGUUGUAUUACUCAGA-GCAGAUGCAUCUG- ................................((((((((((.((((((...(---((.((((.....)))).))).))))))-))))))))))...- ( -22.10, z-score = -2.17, R) >droYak2.chrX 9181415 93 + 21770863 UUCCAUGUCUAUUUACCCGAUGUUAACUGAAAAUGUAUCUGCCUCUGGGGAGA---AUUCAAACCCAAGG-GUAUUACCCAGA-GCAGAUGCAUGCAA ...........................((...((((((((((.((((((...(---((....(((....)-))))).))))))-)))))))))).)). ( -29.60, z-score = -3.17, R) >droEre2.scaffold_4690 6726727 92 - 18748788 UUCCAUGUCUUUUUACCCGAUGU-AACUGAAAAUGUAUCUGCUUCUGGGGAGA---AUUCAACCCAAAAA-GAAUUGCCCAGA-GCAGAUGCAUGCAA ....(((((.........)))))-...((...(((((((((((.(((((...(---((((..........-))))).))))))-)))))))))).)). ( -27.90, z-score = -3.48, R) >droAna3.scaffold_13117 1232022 98 + 5790199 AUGUAAAUGUGUGUAUCUAUGAUCGAAUACAAAGGUCUCUGCUUUUGGGAGAGUACAUAUGCCUCCAUAGAUCAUCAGAUAGAAGCAGACUCCUUCGA ..((...(((.(.(((((((((((.....(((((((....)))))))((((.(((....)))))))...)))))).))))).).))).))........ ( -27.90, z-score = -1.91, R) >consensus UUCCAUGUCUAUUUACCCGAUGUUAACUGAAAAUGUAUCUGCUUCUGGGAAGA___AUUUAACCAAAAAG_GAAUUACUCAGA_GCAGAUGCAUGCGA ................................((((((((((.((((((.((.....(((......))).....)).)))))).)))))))))).... (-20.36 = -19.62 + -0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:20 2011