| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,985,940 – 14,986,037 |
| Length | 97 |
| Max. P | 0.655197 |
| Location | 14,985,940 – 14,986,037 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 61.48 |
| Shannon entropy | 0.76487 |
| G+C content | 0.43624 |
| Mean single sequence MFE | -23.41 |
| Consensus MFE | -7.47 |
| Energy contribution | -7.56 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.68 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.655197 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14985940 97 - 22422827 GUGACAGGCGUUACAAUAUUAAUACCAAUCCCUAUUUCCCAUUCCCGGACUCGU-UUCGACUACGGUUAAAAAUAGUCCAGAGUAUCGGGGAUAAGAG------ (((((....))))).............((((((.......((((..(((((..(-((..((....))..)))..))))).))))...)))))).....------ ( -24.80, z-score = -1.74, R) >droWil1.scaffold_180777 2317719 98 + 4753960 ------AUCAUCACCAUUACCAGCAACGUCAACAAUUUCAAUUGUUUCUCUCUCGCACAAGUCUAAAAAUAAAAUAAAAUGCGGGACCAGAAACGGGAUGAGAG ------.(((((.((............(....)..........((((((.(((((((......................)))))))..)))))))))))))... ( -19.95, z-score = -2.38, R) >dp4.Unknown_group_716 941 97 - 19089 ------GUCGUUGUGGUUGUGAUGGCUGUCACUCGCUCACUCGCUCACACUUUC-GCCGACCGCCGACCCACUCUGGUCGGAGUUAUAAAUAGCAAACAGAAAG ------.....(((((..((((((((........)).)).)))))))))(((((-........((((((......)))))).((((....)))).....))))) ( -24.60, z-score = 0.17, R) >droEre2.scaffold_4690 6722237 97 + 18748788 GUGACAGGCGUUACAAUAUUAAUACCAAUCCCUAUUUUCCAUUCCCGGACUCCU-UCUGACUGGGGUUAAAAAUAGUCCAGAGUAGCGGGGAUUAGAG------ (((((....)))))............((((((..((....((((..(((((..(-(.((((....)))).))..))))).))))))..))))))....------ ( -23.00, z-score = -0.14, R) >droYak2.chrX 9177039 98 - 21770863 GUGACAGGCGUUACAAUAUUAAUACCAAUCCCUAUUUCCCAUUCCUGGACUCUUAUUCGACUGAGGUUAAAAAUAGUCCAGAGUAGCGGGGAUAACAU------ (((((....))))).............(((((..((....((((.((((((.((.((..((....))..)))).))))))))))))..))))).....------ ( -22.70, z-score = -0.99, R) >droSec1.super_32 432699 97 - 562834 GUGAUAGGCGUUACAAUAUUAAUACCAAUCCCUAUUUCCCAUUCCCGAACUCUU-UUCGACUACGGUUAAAAAUAGUCCAGAGUAGCGGGGAUAAGAG------ ..(((.((..(((......)))..)).)))......((..(((((((.((((((-((..((....))..))).......)))))..)))))))..)).------ ( -21.91, z-score = -1.38, R) >droSim1.chrX 11562864 97 - 17042790 GUGACAGGCGUUACAAUAUUAAUACCAAUCCCUAUUUCCCAUUCCCGGACUCUU-UUCGACUACGGUUAAAAAUAGUCCAGAGUAGCGGGGAUAAGAG------ (((((....))))).............(((((..((....((((..(((((.((-((..((....))..)))).))))).))))))..))))).....------ ( -26.90, z-score = -2.57, R) >consensus GUGACAGGCGUUACAAUAUUAAUACCAAUCCCUAUUUCCCAUUCCCGGACUCUU_UUCGACUACGGUUAAAAAUAGUCCAGAGUAGCGGGGAUAAGAG______ ......((.((((......)))).))..............(((((((.((((......(((((..........)))))..))))..)))))))........... ( -7.47 = -7.56 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:16 2011