| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,984,730 – 14,984,840 |
| Length | 110 |
| Max. P | 0.998777 |
| Location | 14,984,730 – 14,984,840 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.58 |
| Shannon entropy | 0.34660 |
| G+C content | 0.42766 |
| Mean single sequence MFE | -31.10 |
| Consensus MFE | -24.12 |
| Energy contribution | -25.40 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.14 |
| Mean z-score | -3.39 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.49 |
| SVM RNA-class probability | 0.998777 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14984730 110 - 22422827 AUACAAUCGUACAUCAAGGCCAGGCCACAAAUGUUGAUGCCCAAUGCUCUUAUCAUUCGGGUAAUAACAUGCCCCAA--UCAAAGUACGAUAACGCUCAAAACAAUAGCACU-------- .....(((((((.....(((...)))....((((((.(((((((((.......)))).))))).)))))).......--.....)))))))...(((.........)))...-------- ( -26.60, z-score = -3.06, R) >droSim1.chrX 11561603 107 - 17042790 ---AUAUCGUACAUCAAGGCCAAACCAAAAAUGUUGAUGCCCAAUGGUCUUAUCAUUCGGGUAUUAACAUGCCCCAA--UCAAAGUACGAUAACGCUCAAAACAAUAGCACU-------- ---.((((((((.....((.....))....((((((((((((((((((...)))))).)))))))))))).......--.....))))))))..(((.........)))...-------- ( -32.00, z-score = -5.61, R) >droSec1.super_32 431574 110 - 562834 AUACAAUCGUACAUCAAGGCCAGACCAAAAAUGUUGAUGCCCAAUGGUCUUAUCAUUCGGGUAUUAACAUGCCCCAA--UCAAAGUACGAUAACGCUCAAAACAAUAGUACU-------- .....(((((((.....((.....))....((((((((((((((((((...)))))).)))))))))))).......--.....))))))).....................-------- ( -29.50, z-score = -4.24, R) >droYak2.chrX 9175862 118 - 21770863 AUACAAUCAGACAUCAAGGCCAGGCCACAAAUGUUGAUGCCCAAUGGUCUUAUCAUUCGGGUAUUAACAUGGCCCAA--UCAUAGUACGAUAAAGCUCAAAACAAUAGCACUGCACAUCU .......(((............(((((....(((((((((((((((((...)))))).))))))))))))))))...--...............(((.........))).)))....... ( -29.00, z-score = -2.23, R) >droEre2.scaffold_4690 6720971 117 + 18748788 AAACAAUCGUACAUCAAGGCCAGGCCACAAAUGUUGAUGCCCAAUGGCCUUAUCAUUCGGGUAUUAACAAGCUCCAA--UCAUAGUACGAUAACGCGCAAAGCAAUAGCACUACAUACA- .....(((((((.....(((...))).....((((((((((((((((.....))))).)))))))))))........--.....)))))))...((.....))................- ( -32.00, z-score = -3.76, R) >droAna3.scaffold_13117 1226715 115 - 5790199 ACCCUAUCACACAUCAAGGCCAGGCCACAAUUGCUGAUGCUCGAUGGCCUUAUCAUUGGGGUAUUAACAUUCCCCGGGCCCAUAGUACAGUAGGGCUUACUCCGAUAGCAUCGGG----- .((((((...((.....((((((((((.....((....))....))))))......(((((..........)))))))))....))...))))))......(((((...))))).----- ( -37.50, z-score = -1.43, R) >consensus AUACAAUCGUACAUCAAGGCCAGGCCACAAAUGUUGAUGCCCAAUGGUCUUAUCAUUCGGGUAUUAACAUGCCCCAA__UCAAAGUACGAUAACGCUCAAAACAAUAGCACU________ .....(((((((.....((.....))....(((((((((((((((((.....))))).))))))))))))..............)))))))...(((.........)))........... (-24.12 = -25.40 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:15 2011