| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,973,219 – 14,973,317 |
| Length | 98 |
| Max. P | 0.604354 |
| Location | 14,973,219 – 14,973,317 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 62.77 |
| Shannon entropy | 0.62763 |
| G+C content | 0.42945 |
| Mean single sequence MFE | -20.55 |
| Consensus MFE | -9.25 |
| Energy contribution | -10.61 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14973219 98 - 22422827 GGCACUAGGUGCCAAAAUACCGGAAUCCAAUGAAAUUCUAGGCUCAACCGUUUGGGAAAAUACCCGCAGACGGACACGCUUUGGGUCUCGAUAACGGU (((((...))))).....((((..(((....((.((((.((((....(((((((((.......)).)))))))....)))).)))).)))))..)))) ( -31.50, z-score = -2.17, R) >droWil1.scaffold_180777 3686467 82 + 4753960 -------------AUACUACCAAAAUUACCUUUCACUUGAAUCCAAAGUUCAUUUCCAAAUA---AAUGUCAUGCAAUCUAAAAGUUUAAAUAUAGAU -------------........................(((((.....)))))..........---...........(((((............))))) ( -2.00, z-score = 1.33, R) >droYak2.chrX 9164824 98 - 21770863 GGCACUAGAUGCAAAAAUUCCGAAAUCCUAUGGAAUUCUAGGCUCAACCAUUUGGGAAAAUACCCACAGACGUACACUCUUUGGGUCUCGAUAACGGA (((.(((((.......((((((........))))))))))))))...((..((((((.....((((.(((.(....)))).))))))))))....)). ( -22.41, z-score = -0.94, R) >droSec1.super_32 419757 84 - 562834 --------------UGGCACUAGAUGUCAAUGGAAUUAUAGGCUCAACCGUUUGGGAAAAUACCCACAGACGGACACACUUUGGGUCUCGAUAACGGU --------------(((((.....))))).((..(((..(((((((((((((((((.......)).))))))).......)))))))).)))..)).. ( -21.51, z-score = -1.09, R) >droSim1.chrX 11549702 84 - 17042790 --------------UGGCACUAGAUGCCAAUGGAAUUCUAGGCUCAACCGUUUGGGAAAAUACCCACAGACGGACACACUUUGGGUCUCGAUAACGGU --------------(((((.....))))).((....((.(((((((((((((((((.......)).))))))).......)))))))).))...)).. ( -25.31, z-score = -2.09, R) >consensus _____________AUAAUACCAGAAUCCAAUGGAAUUCUAGGCUCAACCGUUUGGGAAAAUACCCACAGACGGACACACUUUGGGUCUCGAUAACGGU ....................................((.(((((((((((((((((.......)).))))))).......)))))))).))....... ( -9.25 = -10.61 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:14 2011