| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,972,146 – 14,972,241 |
| Length | 95 |
| Max. P | 0.962498 |
| Location | 14,972,146 – 14,972,241 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 78.29 |
| Shannon entropy | 0.35359 |
| G+C content | 0.41555 |
| Mean single sequence MFE | -15.32 |
| Consensus MFE | -10.21 |
| Energy contribution | -12.02 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.71 |
| SVM RNA-class probability | 0.962498 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14972146 95 + 22422827 CGCGAAACGUGCUA---------AGUUAACCCCUAAAACGAAGCACCAUCCUCCUUUUUUUUUAAAC---CAUCCAUCAGCACGUUU--UUAGUCCCUAAAAUC-UACAA ...((((((((((.---------...........((((.((((..........)))).)))).....---........)))))))))--)..............-..... ( -12.21, z-score = -2.27, R) >droSim1.chrX 11548576 107 + 17042790 CGCAAAACGUGCUAGCCACCAAAAGUUAACCCCUAAAAAGCGGCACCGUCCCCCCUUUUUUUAAAAAAAACAUCAAUCAGCACGUUU--UUAGUCCCUAAAAUC-UACAA ...(((((((((((((........))))......((((((.((........)).))))))...................))))))))--)..............-..... ( -15.30, z-score = -2.44, R) >droSec1.super_32 418603 105 + 562834 CGCGAAACGUGCUAGCCACUAAAAGUUAACCCCUAAAAAACGGAACCAUCCCCCUUUUUUUUAAAAAA--CAUCCAUCCGCACGUUU--UUAGUCCCUAAAAUC-UACAA ...(((((((((((((........))))......((((((.((........)).))))))........--.........))))))))--)..............-..... ( -14.80, z-score = -2.43, R) >droEre2.scaffold_4690 6707266 102 - 18748788 --CGAAACGUGCUAGCCGCGGAAAGUUAACCCCUAAAAAGCGGCACCAUCCCCCUGUUUU----AACC--CAUAUUUCAGCACGUUAAGCAAGACCCUAAAAUCAUAUAU --...((((((((.(((((....................)))))..((......))....----....--........))))))))........................ ( -18.95, z-score = -1.88, R) >consensus CGCGAAACGUGCUAGCCAC_AAAAGUUAACCCCUAAAAAGCGGCACCAUCCCCCUUUUUUUUAAAAAA__CAUCCAUCAGCACGUUU__UUAGUCCCUAAAAUC_UACAA ....((((((((((((........)))).....((((((((((..........))))))))))................))))))))....................... (-10.21 = -12.02 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:13 2011