| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,420,536 – 11,420,631 |
| Length | 95 |
| Max. P | 0.956192 |
| Location | 11,420,536 – 11,420,631 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 75.83 |
| Shannon entropy | 0.47354 |
| G+C content | 0.42641 |
| Mean single sequence MFE | -22.82 |
| Consensus MFE | -10.05 |
| Energy contribution | -11.63 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11420536 95 - 23011544 UUUCAUAAAUUAUUUGUCACAAUUAAUUGAAUUGUGUCUCUGUGGG--UGUGGGUCAUCCCUGCCCCGCCCUACCUUUCUUUCACCUCCCACUGCAU ...............(.(((((((.....))))))).)...(((((--.(((((.((....)).))))))))))....................... ( -22.00, z-score = -2.74, R) >droSim1.chr2L 11229054 97 - 22036055 UUUCAUAAAUUAUUUGUCACAAUUAAUUGAAUUGUGUCUCUGUGGGUGUGUGGGUCAUCCCUGCCCCGCCCCACUUUUCUUUCACCUCCCACUGCAU ...............(.(((((((.....))))))).)...(((((.(((.((((.......))))))))))))....................... ( -24.40, z-score = -3.07, R) >droSec1.super_3 6815484 95 - 7220098 UUUCAUAAAUUAUUUGUCACAAUUAAUUGAAUUGUGUCUCUGUGGG--UGUGGGUCAUCCCUGCCCCGCCCCACUGUUCUUUCACCUCCCACUGCAU ...............(.(((((((.....))))))).)...(((((--.(((((.((....)).))))))))))....................... ( -24.70, z-score = -3.08, R) >droEre2.scaffold_4929 12622441 94 + 26641161 UUUCAUAAAUUAUUUGUCACAAUUAAUUGAAUCGUGUCUCUGUGGG--UGUGGGUCAUCCCCGCCCCGCCCC-CUUUUCUUUCAACGCCCAAUGCAU ..........................(((((..........(((((--.(((((.....))))))))))...-.......))))).((.....)).. ( -19.85, z-score = -1.53, R) >droAna3.scaffold_12916 12126825 79 + 16180835 UUUCAUAAAUUAUUUGUCACAAUUAAUUGAAUUGUGU--CUGCGGGUGUGUGGAUGACCCCGGCACAUCCUUGCACUUCAU---------------- ...............(.(((((((.....))))))).--)(((((((((((((......)).))))))))..)))......---------------- ( -21.10, z-score = -1.59, R) >droMoj3.scaffold_6500 5080600 95 + 32352404 UUUCAUAAAUUAUUUGUCACAAUUAAUUGAAUUGUGU-UCAACGGGUGUGU-GAUAUUGUGUAGGUUUAUCAACCGCACCCUCCCUUCCGUAUGAAA .((((((......(((.(((((((.....))))))).-.))).((((((((-((((...........)))))..))))))).........)))))). ( -24.90, z-score = -2.93, R) >consensus UUUCAUAAAUUAUUUGUCACAAUUAAUUGAAUUGUGUCUCUGUGGG__UGUGGGUCAUCCCUGCCCCGCCCCACUUUUCUUUCACCUCCCACUGCAU .................(((((((.....))))))).....(((((...(((((.(......).))))))))))....................... (-10.05 = -11.63 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:34 2011