| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,959,350 – 14,959,445 |
| Length | 95 |
| Max. P | 0.993055 |
| Location | 14,959,350 – 14,959,445 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 93.86 |
| Shannon entropy | 0.10119 |
| G+C content | 0.32001 |
| Mean single sequence MFE | -18.00 |
| Consensus MFE | -15.31 |
| Energy contribution | -15.75 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.637265 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14959350 95 + 22422827 UAUCACAAGCACACACCCGCAUAUCUAUAAAUAUGCGGAAUACUAUAUCUCUCCUGACUACAUAAUGUAUGAUAUAUAAUCGUAUAUGCAUUGAU .....(((((......((((((((......))))))))..........................(((((((((.....))))))))))).))).. ( -20.80, z-score = -2.80, R) >droYak2.chrX 9151552 93 + 21770863 UAUCACAAGCACACACCCGCAUAUCUAUAAAUAUACGGAAUACUAUAUCUC--CUGACUACAUAAUAUAUGAUAUAUAUAUGCAUAUGUAUGGAA .........((.(((...((((((.((((.......(((..........))--)......((((...)))).)))).))))))...))).))... ( -11.60, z-score = 0.48, R) >droSec1.super_32 406559 95 + 562834 UAUCACAAGCACACACCCGCAUAUCUAUAAAUAUGCGGAAUACUAUAUCUCUCCUGACUACAUAAUGUAUGAUAUAUAAUCGUAUAUGCAUAGAU ........((......((((((((......))))))))..........................(((((((((.....)))))))))))...... ( -19.80, z-score = -2.36, R) >droSim1.chrX 11536295 95 + 17042790 UAUCACAAGCACACACCCGCAUAUCUAUAAAUAUGCGGAAUACUAUAUCUCUCCUGACUACAUAAUGUAUGAUAUAUAAUCGUAUAUGCAUAGAU ........((......((((((((......))))))))..........................(((((((((.....)))))))))))...... ( -19.80, z-score = -2.36, R) >consensus UAUCACAAGCACACACCCGCAUAUCUAUAAAUAUGCGGAAUACUAUAUCUCUCCUGACUACAUAAUGUAUGAUAUAUAAUCGUAUAUGCAUAGAU ........((......((((((((......))))))))..........................(((((((((.....)))))))))))...... (-15.31 = -15.75 + 0.44)
| Location | 14,959,350 – 14,959,445 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 93.86 |
| Shannon entropy | 0.10119 |
| G+C content | 0.32001 |
| Mean single sequence MFE | -31.43 |
| Consensus MFE | -27.17 |
| Energy contribution | -28.05 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.07 |
| Mean z-score | -3.29 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.59 |
| SVM RNA-class probability | 0.993055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14959350 95 - 22422827 AUCAAUGCAUAUACGAUUAUAUAUCAUACAUUAUGUAGUCAGGAGAGAUAUAGUAUUCCGCAUAUUUAUAGAUAUGCGGGUGUGUGCUUGUGAUA ((((..(((((((((((((((((........))))))))).................(((((((((....)))))))))))))))))...)))). ( -34.60, z-score = -4.56, R) >droYak2.chrX 9151552 93 - 21770863 UUCCAUACAUAUGCAUAUAUAUAUCAUAUAUUAUGUAGUCAG--GAGAUAUAGUAUUCCGUAUAUUUAUAGAUAUGCGGGUGUGUGCUUGUGAUA .......((((.((((((((.......(((((((((......--...))))))))).(((((((((....))))))))))))))))).))))... ( -26.30, z-score = -1.60, R) >droSec1.super_32 406559 95 - 562834 AUCUAUGCAUAUACGAUUAUAUAUCAUACAUUAUGUAGUCAGGAGAGAUAUAGUAUUCCGCAUAUUUAUAGAUAUGCGGGUGUGUGCUUGUGAUA (((...(((((((((((((((((........))))))))).................(((((((((....)))))))))))))))))....))). ( -32.40, z-score = -3.49, R) >droSim1.chrX 11536295 95 - 17042790 AUCUAUGCAUAUACGAUUAUAUAUCAUACAUUAUGUAGUCAGGAGAGAUAUAGUAUUCCGCAUAUUUAUAGAUAUGCGGGUGUGUGCUUGUGAUA (((...(((((((((((((((((........))))))))).................(((((((((....)))))))))))))))))....))). ( -32.40, z-score = -3.49, R) >consensus AUCUAUGCAUAUACGAUUAUAUAUCAUACAUUAUGUAGUCAGGAGAGAUAUAGUAUUCCGCAUAUUUAUAGAUAUGCGGGUGUGUGCUUGUGAUA (((...(((((((((((((((((........))))))))).................(((((((((....)))))))))))))))))....))). (-27.17 = -28.05 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:12 2011