| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,955,628 – 14,955,730 |
| Length | 102 |
| Max. P | 0.921368 |
| Location | 14,955,628 – 14,955,730 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 75.11 |
| Shannon entropy | 0.43987 |
| G+C content | 0.41279 |
| Mean single sequence MFE | -23.47 |
| Consensus MFE | -14.02 |
| Energy contribution | -15.25 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.921368 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14955628 102 - 22422827 AUCUGUCGUCCAAAAAUAACGACCGCCAUCCAGGAUAA----AAGCUUG-CAGGCUGAUAAGAGCCAAUAAGAGCU-AAAAGCUUCCUGUAGGCAAACAAAAACAAAU----------- ....(((((.........))))).(((...(((((...----.(((((.-..((((......)))).....)))))-.......)))))..)))..............----------- ( -25.40, z-score = -2.88, R) >droEre2.scaffold_4690 6691263 102 + 18748788 AUCUGGUGUCCAAAAAUAACGACCGUCAUCCGGGAUAA----AAGCUUA-CAAGCUGAUAAGAGCCAAUAAGAGCG-AAAAGCUUCCUGUAGGCAAACAAAAACAAAG----------- ......(((((.......((....))......))))).----..(((((-((.(((......)))......((((.-....))))..)))))))..............----------- ( -18.82, z-score = -0.70, R) >droYak2.chrX 9147927 102 - 21770863 AUCUGUCGUCCAAAAAUAACGACCGCCAUCCAGGAUGA----AAGCUUA-CAGGCUGAUAAGAGCCAAUAAGAGCG-AAAAGCUUCCUAUAGGCAAACAAAAACAAAU----------- ....(((((.........))))).(((....((((...----...((((-..((((......))))..))))(((.-....)))))))...)))..............----------- ( -22.60, z-score = -2.43, R) >droSec1.super_32 402851 102 - 562834 AUCUGUCGUCCAAAAAUAACGACCGCCAUCCAGGAUAA----AAGCUUG-CAGGCUGAUAAGAGCCAAUAAGAGCG-AAAAGCUUCCUGUAGGCAAACAAAAACAAAU----------- ....(((((.........))))).(((...(((((...----...((((-..((((......))))..))))(((.-....))))))))..)))..............----------- ( -25.50, z-score = -2.81, R) >droSim1.chrX 11532637 102 - 17042790 AUCUGUCGUCCAAAAAUAAGGACCGCCAUCCAGGAUAA----AAGCUUG-CAGGCUGAUAAGAGCCAAUAAGAGCG-AAAAGCUUCCUGUAGGCAAACAAAAACAAAU----------- .......((((........)))).(((...(((((...----...((((-..((((......))))..))))(((.-....))))))))..)))..............----------- ( -26.60, z-score = -2.73, R) >apiMel3.GroupUn 383764492 118 + 399230636 ACACCUCAGCCAAACGU-GUGACUUACAUUCGUAACAAGCUCGAAUUUGCCAUGCAUACAUGUUCCAAAACGUGUGUAUAAGCUAGUAGAAGAUGUGUGUGUAUGAGAAAAAGACGAAU ((((...........))-)).......((((((......((((....(((((((((((((((((....))))))))).....((......))..))))).)))))))......)))))) ( -21.90, z-score = 0.61, R) >consensus AUCUGUCGUCCAAAAAUAACGACCGCCAUCCAGGAUAA____AAGCUUG_CAGGCUGAUAAGAGCCAAUAAGAGCG_AAAAGCUUCCUGUAGGCAAACAAAAACAAAU___________ ....(((((.........))))).(((...(((((.........((((....((((......)))).....)))).........)))))..)))......................... (-14.02 = -15.25 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:11 2011