| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,945,206 – 14,945,309 |
| Length | 103 |
| Max. P | 0.875439 |
| Location | 14,945,206 – 14,945,309 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 89.09 |
| Shannon entropy | 0.19025 |
| G+C content | 0.52099 |
| Mean single sequence MFE | -30.18 |
| Consensus MFE | -26.52 |
| Energy contribution | -25.80 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.875439 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14945206 103 + 22422827 AUCAUCUACCCACAAGAGACACACAGCUGAAUGAAGCUAAAAGGAGCGGUGGGCGGUGGAAUGGUUGGAGCACCAUUGCCA---CCAUUACCACCACCGAUCAUAC ........(((((...........((((......))))..........)))))((((((..(((((((.(((....)))..---)))..))))))))))....... ( -30.50, z-score = -1.80, R) >droSim1.chrX 11523183 102 + 17042790 AGCAUCUACCCACAAGAGACACAGAGCUGAAUGAAGCUAGA-GAAGCGGUGGGCGGUGGAAUGGUUGGAGCACCAUUGCCA---UCAUUAUCACCACCGAUCAUAC .(..(((.......)))..)....((((......)))).((-....((((((..(((((((((((......)))))).)))---)).......)))))).)).... ( -27.80, z-score = -0.92, R) >droSec1.super_32 392524 102 + 562834 AGCAUCUACCCACAAGAGACACAGAGCUGAAUGAAGCUAGA-GGAGCGGUGGGCGGUGGAAUGGUUGGAGCACCAUUGCCA---UCAUUAUCACCACCGAUCAUAC .(..(((.......)))..)....((((......))))...-.((.((((((..(((((((((((......)))))).)))---)).......)))))).)).... ( -28.30, z-score = -0.73, R) >droYak2.chrX 9138018 92 + 21770863 -------------CAGAGACAUAGAGCUGAAUGAAGCUAGA-GGAGCGGUGGGCGGUGGAGUGGUUGGAGCACCAUUGCCAUUACCAUUAUCACCACCGAUCAUAC -------------...........((((......))))...-.((.((((((..((((((((((((((....)))..)))))).)))))....)))))).)).... ( -30.80, z-score = -2.72, R) >droEre2.scaffold_4690 6681125 102 - 18748788 AGCAUCUACCCACAAGAGACACAGAGCUGAAUGAAGCUAGA-GGAGCGGUUGGCGGUGGAGUGGUUGGAGCACCAUUGCCA---CCAUUACCACCACCGAUCAUAC .((.(((.......)))..(....((((......))))...-.).))((((((.(((((((((((.((..........)))---))))).))))).)))))).... ( -33.50, z-score = -2.45, R) >consensus AGCAUCUACCCACAAGAGACACAGAGCUGAAUGAAGCUAGA_GGAGCGGUGGGCGGUGGAAUGGUUGGAGCACCAUUGCCA___CCAUUAUCACCACCGAUCAUAC ........................((((......)))).........(((.((.((((((((((...(.(((....))))....))))).))))).)).))).... (-26.52 = -25.80 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:09 2011