| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,941,431 – 14,941,529 |
| Length | 98 |
| Max. P | 0.535682 |
| Location | 14,941,431 – 14,941,529 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 75.05 |
| Shannon entropy | 0.42335 |
| G+C content | 0.46564 |
| Mean single sequence MFE | -19.27 |
| Consensus MFE | -16.16 |
| Energy contribution | -16.16 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.54 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.535682 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14941431 98 + 22422827 CGAGUGUGUUUGCAGAUCGUUGGGCAAUAUCGUUAGCUGAUUAUGAUCGACACUCUCAACUGACACCACACCCCCCUCACCACCCCUCUAGUAGUUGG .(((((((....).(((((((.(((..........))).)..)))))).)))))).((((((.(..........................))))))). ( -16.87, z-score = 1.40, R) >droSim1.chrX 11519652 95 + 17042790 CGAGUGUGUUUGCAGAUCGUUGGGCAAUAUCGUUAGCUGAUUAUGAUCGACACUCUCAACUAACCUAAACCCCCCCUCCCC---ACUAAAGUAUAUGG .(((.(((((....(((((((.(((..........))).)..))))))))))).)))........................---.............. ( -16.30, z-score = 0.14, R) >droSec1.super_32 388988 98 + 562834 CGAGUGUGUUUGCAGAUCGUUGGGCAAUAUCGUUAGCUGAUUAUGAUCGACACUCUCAACUAACCUAAACCCCCCCUUCCCGACACUAAAGUAUAUAU .(((.(((((....(((((((.(((..........))).)..))))))))))).)))......................................... ( -16.30, z-score = -0.05, R) >droYak2.chrX 9135182 78 + 21770863 CGAGUGUGUUUGCAGAUCGUUGGGCAAUAUCGUUAGCUGAUUAUGAUCGACACUCUCAACUGCCACCAAAGUAGUUGG-------------------- .(((((((....).(((((((.(((..........))).)..)))))).)))))).(((((((.......))))))).-------------------- ( -21.80, z-score = -1.32, R) >droEre2.scaffold_4690 6678154 77 - 18748788 CGAGUGUGUUUGCAGAUCGUUGGGCAAUAUAGUUAGCUGAUUAUGAUCGACACACUCAACUGCC-CCAAAGUAGUUGG-------------------- .(((((((((....(((((((.(((..........))).)..)))))))))))))))((((((.-.....))))))..-------------------- ( -25.10, z-score = -2.85, R) >consensus CGAGUGUGUUUGCAGAUCGUUGGGCAAUAUCGUUAGCUGAUUAUGAUCGACACUCUCAACUGACACCAAACCCCCCUC_CC____CU__AGUA__U__ .(((.(((((....(((((((.(((..........))).)..))))))))))).)))......................................... (-16.16 = -16.16 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:08 2011